Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 520 / 0 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 504 / 6e-175 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 462 / 1e-158 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT2G25160 404 / 9e-136 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT3G25180 395 / 2e-132 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT5G07990 314 / 6e-101 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37400 306 / 4e-98 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT5G67310 301 / 7e-96 CYP81G1 "cytochrome P450, family 81, subfamily G, polypeptide 1", cytochrome P450, family 81, subfamily G, polypeptide 1 (.1) AT4G37370 300 / 1e-95 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37430 296 / 4e-94 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G038000 [exp] 1009 / 0 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038200 [exp] 1001 / 0 AT4G31940 501 / 7e-174 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 613 / 0 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037600 [exp] 610 / 0 AT4G31940 478 / 7e-165 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037400 [exp] 607 / 0 AT4G31940 476 / 4e-164 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037800 [exp] 605 / 0 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037500 [exp] 569 / 0 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037900 [exp] 520 / 0 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.016G008500 [exp] 511 / 2e-177 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011657 [exp] 621 / 0 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032743 [exp] 595 / 0 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10035635 [exp] 589 / 0 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032745 [exp] 480 / 1e-165 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10007837 [exp] 479 / 2e-165 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011658 [exp] 476 / 3e-164 AT4G31940 510 / 9e-178 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10010758 [exp] 448 / 3e-154 AT4G31970 346 / 1e-114 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10038203 [exp] 446 / 4e-152 AT3G25180 495 / 9e-172 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Lus10025902 [exp] 430 / 7e-146 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 429 / 9e-146 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.014G038100.3 pacid=42763296 polypeptide=Potri.014G038100.3.p locus=Potri.014G038100 ID=Potri.014G038100.3.v4.1 annot-version=v4.1 ATGGATGTTTTTTATCTTCCATTCCTCACAAATAACATGACCACCAATCCCATGTTTTTAATTTTTATTTTTATCTGTTCAATCTTCTGGATTTCAAGAA AATTTTTAGCAGGCACAGGCAAGAAGAAAGCAGCCCCAAAAGCTGGTGGAGCATGGCCTGTGATTGGCCACCTCCATCTGTTAGGAGGGGCGGAACCTCC CCATAAAGTACTGGGCAACATGGCTGAAAAATATGGACCCATCTTCACAATCAAGATGGGCGTGCACCGAGCTTTGGTAGTAAGCAATTGGGAGACCGCC AAGGAGTGTTTCACCACCCATGATAAAGCCTTTTCCGGTCGTCCGAGAACACTTGCCTCTGAGCTTTTGACCTACGATGGTGCAATGGTGGGGTTTAGCC CATATGGGCCTTATTGGCGTCAAGTCCGCAAAATAACCACGGTTGAGCTTCTATCAAACTACCGGCTAGAGAAGCTGAAAGATGTACGAGAGAGCGAGGT AAGGGCATTTCTGAAAGAGTTGTACAAGTTATGGGACGAGAATAGAGGTAGTGCATCAAAATCAAAAAGTAATCTGGCATTGGTGGAAATGAAAAGATGG TTTGGAGATCTAACATTAAACATCGTTCTTAGAACAATTGTTGGAAAAACTGTGGGATATATCACAAACGTTGAGGATGAGGAGAGTGTGGAAGGATGGA AAAAGGGATTGAAGGATTTTTTTCATTGGACAGGGGTGTTTTCGGTGTCTGATGCGCTACCATTTTTAAGGTTTTTGGATCTTGGGGGGCATGGGGAGGC TATGAAGAAGACTGCAAAAGAACTGGACCTTGTTGTTGAAGATTGGCTCAAAGAACACAAACGAAAAAGAGCTGCTGGAATTGTTAAGGGTAAGGAGGAC TTCATGGATGTGATGCTAGATGTTTTCGATAATGACGCAGAAGCAGTTCAAGGCGGAGATTCTGATACCACCATCAAAGCTACATCCCTGGCCCTTATTC TGGCAGCCTCAGACACGACAGCAGTGACTTTGATATGGGCTCTCTCTTTACTAGTCAATAATCCTAATGTACTAAAGAAGGCACAGCTTGAATTAGACAC CCACGTTGGTAAGGAAAGACAAGTGGAAGAATCGGATGTGCAAAATTTGGTCTACCTTAAAGCTGTTCTCAAGGAAACGCTGCGTTTATACCCAGCTGGA CCTCTCTTGGTACCACATGAGGCCATTGAGGATTGCACCATAGATGGCTACCATGTTCCGAGAGGGACAAGACTTCTCGTTAATGTTTCGAAGATTCATC GTGATGAAAGGGTGTGGTCCAACCCTAACGAGTTTGATCCAGAAAGATTTCTAACAACTCACAGAGGTTTTGATGTTAGAGGAAAAAACTTCGAGTTTTT TCCGTTTGGAAGTGGTAGAAGAATGTGCCCTGGAGTATCTTTTGCCCTTCATGTCATGGATCTAGCACTGGCTACATTGCTACATGGGTTTGATTTTGCA ACCCCGTCAGGTGAGCCTGTTGATATGCATGAGAGCAGTGGATTAACCAACCTCCGAGCAACGCCCCTCGAAGTTCTTCTCAGTCCACGCCTTCCTTCTC GTTTATATGGACATTAA
AA sequence Show only first row Show all	>Potri.014G038100.3 pacid=42763296 polypeptide=Potri.014G038100.3.p locus=Potri.014G038100 ID=Potri.014G038100.3.v4.1 annot-version=v4.1 MDVFYLPFLTNNMTTNPMFLIFIFICSIFWISRKFLAGTGKKKAAPKAGGAWPVIGHLHLLGGAEPPHKVLGNMAEKYGPIFTIKMGVHRALVVSNWETA KECFTTHDKAFSGRPRTLASELLTYDGAMVGFSPYGPYWRQVRKITTVELLSNYRLEKLKDVRESEVRAFLKELYKLWDENRGSASKSKSNLALVEMKRW FGDLTLNIVLRTIVGKTVGYITNVEDEESVEGWKKGLKDFFHWTGVFSVSDALPFLRFLDLGGHGEAMKKTAKELDLVVEDWLKEHKRKRAAGIVKGKED FMDVMLDVFDNDAEAVQGGDSDTTIKATSLALILAASDTTAVTLIWALSLLVNNPNVLKKAQLELDTHVGKERQVEESDVQNLVYLKAVLKETLRLYPAG PLLVPHEAIEDCTIDGYHVPRGTRLLVNVSKIHRDERVWSNPNEFDPERFLTTHRGFDVRGKNFEFFPFGSGRRMCPGVSFALHVMDLALATLLHGFDFA TPSGEPVDMHESSGLTNLRATPLEVLLSPRLPSRLYGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038100 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038200 [exp]	1.00	0.9617
AT4G33040			Thioredoxin superfamily protei...		Potri.006G226900 [exp]	1.73	0.8945
AT3G47570			Leucine-rich repeat protein ki...		Potri.005G031300 [exp]	2.44	0.8978
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Potri.016G112300 [exp]	2.44	0.8640
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038000 [exp]	2.82	0.8895
AT5G13920			GRF zinc finger / Zinc knuckle...		Potri.009G112676 [exp]	5.29	0.8528
AT2G40160		TBL30	Plant protein of unknown funct...		Potri.008G070101 [exp]	8.00	0.8173
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G074000 [exp]	8.36	0.8424
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.012G132400 [exp]	9.79	0.8446	Pt-GA20.1,GA20ox6
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Potri.009G118800 [exp]	10.39	0.8133	Pt-APL3.2

Compare expression of checked genes

Potri.014G038100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.