Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 501 / 1e-173 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 486 / 8e-168 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 452 / 6e-155 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT2G25160 394 / 5e-132 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT3G25180 387 / 2e-129 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT5G07990 307 / 2e-98 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37400 299 / 2e-95 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT4G37370 296 / 2e-94 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT5G67310 294 / 3e-93 CYP81G1 "cytochrome P450, family 81, subfamily G, polypeptide 1", cytochrome P450, family 81, subfamily G, polypeptide 1 (.1) AT4G37340 288 / 3e-91 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G038100 [exp] 981 / 0 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038000 [exp] 976 / 0 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 596 / 0 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037600 [exp] 593 / 0 AT4G31940 478 / 7e-165 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037400 [exp] 592 / 0 AT4G31940 476 / 4e-164 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037800 [exp] 588 / 0 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037500 [exp] 555 / 0 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037900 [exp] 501 / 8e-174 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.004G106600 [exp] 491 / 4e-170 AT3G25180 514 / 1e-179 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011657 [exp] 610 / 0 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032743 [exp] 578 / 0 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10035635 [exp] 572 / 0 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032745 [exp] 472 / 2e-162 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10007837 [exp] 470 / 8e-162 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011658 [exp] 469 / 3e-161 AT4G31940 510 / 9e-178 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038203 [exp] 443 / 7e-151 AT3G25180 495 / 9e-172 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Lus10010758 [exp] 438 / 4e-150 AT4G31970 346 / 1e-114 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10038200 [exp] 421 / 2e-142 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 420 / 3e-142 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.014G038200.1 pacid=42764345 polypeptide=Potri.014G038200.1.p locus=Potri.014G038200 ID=Potri.014G038200.1.v4.1 annot-version=v4.1 ATGGAGTTTTTTTATCTTCCATTCCTCACCAATAACATGACCTCCAATCCCATGTTTTTCATTTTTATTTTTATCTGTTCAATCTTCTGGATTTCAAGAA AATTCTTAGCAGGCACAGGCAAGAAGAAAGCAGCACCAAAAGCTGGTGGAGCATGGCCTGTGATTGGCCACCTCCATCTGTTAGGAGGGGCGGAACCTCC CCATAAAGTACTGGGCAGCATGGCTGAAAAATATGGACCCATCTTCACAATCAAGATGGGCGTGCACCGAGCTTTGGTAGTAAGCAATTGGGAGACCGCC AAGGAGTGTTTCACCACCCATGATAAAGCCTTTTCCGGTCGTCCGAGAACACTTGCCTCTGAGCTTTTGACATATGATGGTGCAATGATGGGGTTTAGCC CATATGGGCCTTATTGGCGTCAAGTCCGCAAAATAACCACGGTTGAGCTTCTATCAAACTACCGGCTAGAGAAGCTGAAAGATGTACGAGAGAGCGAGGT AAGGGCATTTCTGAAAGAGTTGTACAAGTTATGGGACGAGAATAGATGTAGTGCATCAAAATCAAAAAGTAGTCTGGTATTGGTGGAAATGAAAAGATGG TTTGGAGATCTAACATTAAACATCGTTCTTAGAACAATTGTTGGAAAAACTGTGGGATATATCTCAAACGTTGAGGATGAGGAGAGTGTGGAAGGATGGA AAAAGGGATTGAAGGATTTTTTTCATTGGACAGGGGTGTTTTCGGTGTCTGATGCGCTACCATTTTTAAGGTTTTTGGATCTTGGGGGGCATGGGGAGGC TATGAAGAAGACTGCAAAAGAACTGGACCTTGTTGTTGAGGATTGGCTACAAGAACACAAGCGAAAAAGAGCTGCTGGAATTGTTAAGGGTAAGGAGGAC TTCATGGATTTGATGCTAGATGTTTTCGATAATGATGCAGAAGCAGTTCAAGGCGGAGATTCTGATACCACCATCAAAGCTACATCCCTGGCCCTTATTC TGGCAGCATCAAACACGACAGCAGTGACTTTGATATGGGCTCTCTCTTTACTAGTCAATAATCCTAATGTATTAAAGAAGGTACAGCTTGAATTAGACAC CCAAGTTGGTAAGGAAAGACAAGTGGAAGAATCGGATATGCAAAATTTGGTCTACCTTAAAGTTGTCATCAAGGAAACGCTGCGTTTATACCCAGCTACA CCACTCTTGATACCACATGAGGCCATTGAGGATTGCACCATAGATGGCTACCATGTTCCGAGAGGGACAAGACTTCTCATTAATGTTCCGAAGATTCATC GTGATGAAAGGGTGTGGTCCAATCCTAACGAGTTTGATCCGGAAAGATTTCTAACAACTCACAGAGGTTTTGATGTTAGAGGAAAAAACTTCGAGTTTTT TCCGTTTGGAAGTGGCAGAAGAAAGTGCCCCGGAGTATCTTTTGCCCTTCATGTCATGGATCTAGCACTGGCTACATTGCTACATGGGTTTGATTTTGCA ACCCCGTCAGGTGAGCCTGTTGATATGCACGAGAGCAGTGGATTAACCAACCTCCGAGCAACGCCCCTCGAAGTTCTTCTCAGTCCACGCCTTCCTTCTC GTCTATATGGACATTAA
AA sequence Show only first row Show all	>Potri.014G038200.1 pacid=42764345 polypeptide=Potri.014G038200.1.p locus=Potri.014G038200 ID=Potri.014G038200.1.v4.1 annot-version=v4.1 MEFFYLPFLTNNMTSNPMFFIFIFICSIFWISRKFLAGTGKKKAAPKAGGAWPVIGHLHLLGGAEPPHKVLGSMAEKYGPIFTIKMGVHRALVVSNWETA KECFTTHDKAFSGRPRTLASELLTYDGAMMGFSPYGPYWRQVRKITTVELLSNYRLEKLKDVRESEVRAFLKELYKLWDENRCSASKSKSSLVLVEMKRW FGDLTLNIVLRTIVGKTVGYISNVEDEESVEGWKKGLKDFFHWTGVFSVSDALPFLRFLDLGGHGEAMKKTAKELDLVVEDWLQEHKRKRAAGIVKGKED FMDLMLDVFDNDAEAVQGGDSDTTIKATSLALILAASNTTAVTLIWALSLLVNNPNVLKKVQLELDTQVGKERQVEESDMQNLVYLKVVIKETLRLYPAT PLLIPHEAIEDCTIDGYHVPRGTRLLINVPKIHRDERVWSNPNEFDPERFLTTHRGFDVRGKNFEFFPFGSGRRKCPGVSFALHVMDLALATLLHGFDFA TPSGEPVDMHESSGLTNLRATPLEVLLSPRLPSRLYGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038200 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038100 [exp]	1.00	0.9617
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038000 [exp]	1.41	0.9388
AT3G47570			Leucine-rich repeat protein ki...		Potri.005G031300 [exp]	1.73	0.9079
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G074000 [exp]	2.82	0.8845
AT5G13920			GRF zinc finger / Zinc knuckle...		Potri.009G112676 [exp]	3.46	0.8658
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Potri.016G112300 [exp]	4.00	0.8479
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411100 [exp]	5.83	0.8116
AT4G33040			Thioredoxin superfamily protei...		Potri.006G226900 [exp]	5.91	0.8521
AT2G40160		TBL30	Plant protein of unknown funct...		Potri.008G070101 [exp]	6.24	0.8210
AT2G40460			Major facilitator superfamily ...		Potri.019G055800 [exp]	7.07	0.8356

Compare expression of checked genes

Potri.014G038200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.