Plant FIBer expression Database

Potri.014G038500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G130500
[exp]
138 / 5e-44 AT5G66985 / unknown protein
Potri.007G034700
[exp]
49 / 8e-09 AT5G66985 43 / 1e-06 unknown protein
Potri.005G131000
[exp]
47 / 9e-08 AT5G66985 43 / 2e-06 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011653
[exp]
78 / 5e-20 ND /
Lus10032742
[exp]
74 / 2e-18 ND /
PFAM info
Representative CDS sequence
>Potri.014G038500.1 pacid=42764696 polypeptide=Potri.014G038500.1.p locus=Potri.014G038500 ID=Potri.014G038500.1.v4.1 annot-version=v4.1
ATGTCTTCTTTAGCGTCTAAAACCCAATCTACGCTCTCAAAATCTGAAAAAATCACAAGCAACACCAGCACTGCCACTAAAGATCAAGAAGACCCAGAAA
TCTTCAACTCCGTGACTAGCTTTGTCTATATAAAACCAGTACACTCCACTAAAACACGAGATAAGGAGGAGGTTTTGCAGAGGATACGACAACGCAAGGG
CGCGAACAAGGTACGAGGTAGTCTGCAAGGTTTTCTTGGATGGTTGTTTTCGTCGAAAAGTGAGAATAAGGTCTCTGCCAAGTGGGTGGATGATGCTTTT
GCTGCCCCATGA
AA sequence
>Potri.014G038500.1 pacid=42764696 polypeptide=Potri.014G038500.1.p locus=Potri.014G038500 ID=Potri.014G038500.1.v4.1 annot-version=v4.1
MSSLASKTQSTLSKSEKITSNTSTATKDQEDPEIFNSVTSFVYIKPVHSTKTRDKEEVLQRIRQRKGANKVRGSLQGFLGWLFSSKSENKVSAKWVDDAF
AAP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.014G038500
[exp]
0 1
AT5G60200 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) Potri.007G038100
[exp]
6.00 0.7696
AT5G55160 ATSUMO2, SUMO2,... small ubiquitin-like modifier ... Potri.014G158300
[exp]
9.48 0.6873 SMT3.2
AT3G12410 Polynucleotidyl transferase, r... Potri.006G031400
[exp]
13.67 0.6969
AT4G00330 CRCK2 calmodulin-binding receptor-li... Potri.001G434200
[exp]
15.58 0.6576
AT4G03170 B3 AP2/B3-like transcriptional fa... Potri.001G397100
[exp]
18.11 0.7340
AT4G28440 Nucleic acid-binding, OB-fold-... Potri.017G014400
[exp]
25.09 0.7143
Potri.016G011250
[exp]
30.62 0.7038
AT4G23880 unknown protein Potri.004G151000
[exp]
40.09 0.7032
AT3G14250 RING/U-box superfamily protein... Potri.003G187700
[exp]
45.46 0.6911
Potri.009G080100
[exp]
45.92 0.6771

Potri.014G038500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.