Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42650 658 / 0 CYP74A, AOS, DDE2 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) AT4G15440 249 / 7e-78 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) AT5G04630 47 / 2e-05 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1) AT3G20110 44 / 0.0002 CYP705A20 "cytochrome P450, family 705, subfamily A, polypeptide 20", cytochrome P450, family 705, subfamily A, polypeptide 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G130700 [exp] 913 / 0 AT5G42650 693 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148900 [exp] 540 / 0 AT5G42650 499 / 2e-174 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G149000 [exp] 530 / 0 AT5G42650 492 / 3e-171 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.009G109700 [exp] 529 / 0 AT5G42650 479 / 2e-166 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148600 [exp] 472 / 7e-164 AT5G42650 442 / 3e-152 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G155800 [exp] 360 / 2e-119 AT4G15440 507 / 6e-179 hydroperoxide lyase 1 (.1) Potri.003G161700 [exp] 47 / 3e-05 AT1G11680 828 / 0.0 embryo defective 1738, CYTOCHROME P450 51A2, CYTOCHROME P450 51G1 (.1) Potri.001G270900 [exp] 47 / 3e-05 AT5G47990 419 / 2e-142 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) Potri.001G003100 [exp] 47 / 4e-05 AT5G36110 424 / 2e-145 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018791 [exp] 642 / 0 AT5G42650 615 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10032739 [exp] 521 / 0 AT5G42650 496 / 8e-173 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10021015 [exp] 455 / 1e-156 AT5G42650 468 / 7e-162 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10021019 [exp] 450 / 2e-154 AT5G42650 474 / 6e-164 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10030029 [exp] 345 / 2e-113 AT4G15440 481 / 3e-169 hydroperoxide lyase 1 (.1) Lus10031540 [exp] 336 / 8e-110 AT4G15440 467 / 3e-163 hydroperoxide lyase 1 (.1) Lus10030032 [exp] 318 / 3e-103 AT4G15440 423 / 2e-146 hydroperoxide lyase 1 (.1) Lus10035289 [exp] 315 / 7e-102 AT4G15440 443 / 2e-154 hydroperoxide lyase 1 (.1) Lus10030033 [exp] 312 / 1e-100 AT4G15440 442 / 7e-154 hydroperoxide lyase 1 (.1) Lus10015138 [exp] 304 / 1e-97 AT4G15440 378 / 2e-128 hydroperoxide lyase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.014G038700.1 pacid=42764313 polypeptide=Potri.014G038700.1.p locus=Potri.014G038700 ID=Potri.014G038700.1.v4.1 annot-version=v4.1 ATGGCTTCATCTTCTCTAGCTTTTCCAACCCTTCAACCCCAATTCCAGTCACTAAAAAACAAATCTACTTCCAAGCCCTCAACTCGTAGACTGTCCTTCC GTACCATCAGAGCATCAGTATCAGAAAAACCATCAGTTTCGGCTCCAGGTGTTACTGTTTCACCACCTGAAAACACCAAACTCCCGATCCGTAAAATCCC TGGTGATTATGGCCTTCCTCTTGTCGGTCCCTTTAAAGATCGTATGGATTATTTTTATAACCAGGGCAGAGACAATTTCTTCAAATCCAAAGTTCTGAAA TACGGATCAACGGTGTTTAGAGCCAACATGGGACCAGGTCCTTTTATTGCTCCAAATCCACAGGTTGTGGTTTTACTTGACGGCAAGAGCTTTCCGGTTC TATTTGACGTGACAAAAGTTGAAAAGAAAGACCTTTTTACAGGTACTTACATGCCTTCAACAGAACTCACTGGTGGCTATCGAATTCTGTCCTATCTCGA TCCATCCGAGCCAATGCACGCCAAATTGAAGAAATTCATGTTCTATCTCCTCAAGTCACGCCGTGATCACGTAATCCCTGAATTCAAAGCCAGTTACACA GAACTCTTTACGAGTCTTGAAAAAGATTTGGCTCTCAAAGGGAAAGCTAATTTCGTCGCTGCTAATGATCAAGCAGCTTTTAACTTCTTGGCTCGGGCTT GGTTTGGTACTGAACCGGCACAGACCAGTCTTGGCCTTGACGGACCTGGTCTAGTTTCAAAATGGGTGCTCTTTAACCTTGGTCCGGTCCTTTCTCTCGG TCTTCCAAAATATCTCGAAGATCTTACAATCCACTCCTTCCGTCTACCACCATCAATGATTAAAAAAAACTACCAGCGCCTTTACGATTTCTTCTATGCT TCGTCAAGCTTCCTGCTCGATGAAGCAGAGAATTTAGGAATTTCACGAGAGGAGGCATGCCATAATCTTCTCTTCTCCACATGCTTTAACTCGTTCGGTG GAATGAAGATTTTATTTCCAAACATGATGAAATGGCTAGGCCGTGCCGGGGCCAAACTCCACGCTCAGTTAGCCGAAGAGATCAGATCAGTTGTTCAATC CGACGGTGGAAATGTTACAATGAGGGGTATGGAACAGATGCCGTTGATGAAATCAGCAGTCTATGAAGCACTCCGGATTGAACCACCAGTCCCTCTACAG TACGGTAAAGCAAAGCGTGATCTGATAATTGAAAGCCACGATGCTGCTTTCGAAGTCAAAGAAGGGGAGCTGTTATTCGGGTTTCAACCATTTGCTACTA AAGACCCGAAAATATTTACTCGGGCTGAAGAGTTTGTTGCTGACAGGTTTATTGGGGAGGGAGAGGAGTTGTTGAAGCATGTGCTGTGGTCTAATGGGCC TGAGACAGAGAAGCCAACGTTGGGAAATAAACAGTGTGCAGGGAAGGATTTTGTTGTACTCGTGGCTAGGCTGCTTGTCGTGGAATTGTTTTTAAGGTAT GATTCTTTTGAGATAGAGGTTGGCAAGTCATCCCTGGGAGCTGCTGTGACGGTCACTTCATTAAAGAGGGCAAGGTTTTAG
AA sequence Show only first row Show all	>Potri.014G038700.1 pacid=42764313 polypeptide=Potri.014G038700.1.p locus=Potri.014G038700 ID=Potri.014G038700.1.v4.1 annot-version=v4.1 MASSSLAFPTLQPQFQSLKNKSTSKPSTRRLSFRTIRASVSEKPSVSAPGVTVSPPENTKLPIRKIPGDYGLPLVGPFKDRMDYFYNQGRDNFFKSKVLK YGSTVFRANMGPGPFIAPNPQVVVLLDGKSFPVLFDVTKVEKKDLFTGTYMPSTELTGGYRILSYLDPSEPMHAKLKKFMFYLLKSRRDHVIPEFKASYT ELFTSLEKDLALKGKANFVAANDQAAFNFLARAWFGTEPAQTSLGLDGPGLVSKWVLFNLGPVLSLGLPKYLEDLTIHSFRLPPSMIKKNYQRLYDFFYA SSSFLLDEAENLGISREEACHNLLFSTCFNSFGGMKILFPNMMKWLGRAGAKLHAQLAEEIRSVVQSDGGNVTMRGMEQMPLMKSAVYEALRIEPPVPLQ YGKAKRDLIIESHDAAFEVKEGELLFGFQPFATKDPKIFTRAEEFVADRFIGEGEELLKHVLWSNGPETEKPTLGNKQCAGKDFVVLVARLLVVELFLRY DSFEIEVGKSSLGAAVTVTSLKRARF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.014G038700 [exp]	0	1
AT1G03220			Eukaryotic aspartyl protease f...		Potri.013G070325 [exp]	2.44	0.9526
					Potri.002G122400 [exp]	3.16	0.9532
AT3G23440		EDA6, MEE37	MATERNAL EFFECT EMBRYO ARREST ...		Potri.010G068800 [exp]	4.00	0.9432
AT1G03220			Eukaryotic aspartyl protease f...		Potri.013G070300 [exp]	6.24	0.9519
AT3G10080			RmlC-like cupins superfamily p...		Potri.010G238100 [exp]	8.77	0.9448
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G102800 [exp]	9.16	0.9449
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Potri.001G154100 [exp]	9.16	0.9282
					Potri.008G082000 [exp]	9.79	0.9212
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G027400 [exp]	9.89	0.9337
AT4G08250	GRAS		GRAS family transcription fact...		Potri.005G190300 [exp]	10.39	0.9503	GRAS43

Compare expression of checked genes

Potri.014G038700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.