Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15690 280 / 2e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14050 266 / 8e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 260 / 9e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32450 253 / 1e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 259 / 2e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G25580 249 / 2e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 248 / 1e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 249 / 5e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 247 / 3e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 242 / 1e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G058300 [exp] 316 / 3e-101 AT2G15690 499 / 2e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G116600 [exp] 296 / 1e-93 AT2G25580 452 / 3e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G130900 [exp] 268 / 9e-89 AT1G47580 143 / 1e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G252400 [exp] 258 / 4e-81 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.017G001000 [exp] 261 / 6e-81 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G044700 [exp] 264 / 2e-80 AT3G22690 582 / 0.0 unknown protein Potri.018G040100 [exp] 262 / 3e-80 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G086200 [exp] 257 / 2e-78 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 255 / 1e-77 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014049 [exp] 280 / 9e-89 AT2G15690 478 / 2e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028413 [exp] 281 / 4e-88 AT2G25580 447 / 8e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041867 [exp] 281 / 9e-88 AT2G25580 447 / 2e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019864 [exp] 278 / 1e-87 AT2G15690 477 / 3e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 260 / 2e-78 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008570 [exp] 250 / 3e-78 AT2G15690 375 / 9e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032688 [exp] 250 / 5e-78 AT2G15690 375 / 2e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040577 [exp] 245 / 2e-77 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018278 [exp] 247 / 2e-75 AT4G14050 805 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000274 [exp] 238 / 1e-74 AT3G47530 554 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.014G038900.1 pacid=42764043 polypeptide=Potri.014G038900.1.p locus=Potri.014G038900 ID=Potri.014G038900.1.v4.1 annot-version=v4.1 ATGGCTAGTTCTCTGAGCTTCTTGTCACAGCCCAGAATTAGACCTGTAACCAAACGTCCTCCCAATCCCTCAAGCTCGTTTCTTGAACTATTGAGTGTTA GCGGTAACAGTTTACAAGTAACAAAGAATAAAGATTTAGCTGTGGTTTCAAGAGCTTATCAACGAGAAATTGCTGGTGTTCAAGGAGAGAATCTGGTGAG GCCAGATTTTGAGCGTTTATGCAAAGAGGGGAAAGTGGAGGCAGCTCTTGAAATCATGGATGAAAAGGAGAGGAATGGAGATTATGCAGACTTGCTCGAT ATTGTAAAGTTGATACAAGTTTGTGCTGATTTGAAATTGCTGGAAGCAGGGAAAAAGGTAGATGAGTATGTTATGAGGTCTTCATCAAAGTTCAAGTCCA GTGTTGTTGTGCTGAATAATCTAGTGGAGATGTACTGTAAACTGGGCGATACAAATGGAGCAAGAGAAATATTTGAGCAAATGGGAGTGAGAAATTTGGA TTCTTGGAACAAGATGCTGTTGGGTTTAGCAGAGAACAAGGAAGGAGAAAAGGCTCTTGAAATCTTTTCCCAGATGAAAGGAGATGGGATTAGGCCAGAT GGTTCTAGCTTTGTTGGTGTTTTAATGGCTTGTGTATGCTTAGGAGCAGAGAAGGAAGGACAGAAACATTTCGAGTCAATGAGCAGGGATTATGGAATCA CTCCCACGGTAGAGCATTATGAAGTTTTCGTTGATCTTCTTGGAAGAACAGGAAAGATAGCGGAGGCAAAGGAGTTAGTTTCAAATATGCCAATTGATCC AAACTCCAGAATTTGGGAGACTCTACAGAAGTACTCAAAAGCCAGAACACAAGGGCAACTGGGTTATCCAGTATCACCACCTGGATTGAAACTTGGTGAT ATGAAAAGGGCAAAGGACAACATCAACACAAATCATAGAAGAGTGACTTCAGACAGAAGCAAGGCATATGAAAAGTTGAGGTCTTTGAGTAAGGAGGTAA GGGATGCTGGATATGTGCCGGACACAAGGTTTGTGCTTCATGATCTTGACCAAGAAGCGAAGGAGAAGGCATTGTTCTACCACAGTGAAAGGCTAGCCAT TGCTTATGGGCTTATCAATACATCTCCTGGGACCACTTTAAGGATAATGAAAAACCTAAGGATTTGTGGGGACTGTCATAATTTCATCAAGATCCTCTCC AAAATCGAGGACCGAGAGTTTATCGTGAGAGACAACAAGAGGTTTCATCATTTCAAGGCTGGAAACTGTTCCTGTCGGGATTACTGGTAG
AA sequence Show only first row Show all	>Potri.014G038900.1 pacid=42764043 polypeptide=Potri.014G038900.1.p locus=Potri.014G038900 ID=Potri.014G038900.1.v4.1 annot-version=v4.1 MASSLSFLSQPRIRPVTKRPPNPSSSFLELLSVSGNSLQVTKNKDLAVVSRAYQREIAGVQGENLVRPDFERLCKEGKVEAALEIMDEKERNGDYADLLD IVKLIQVCADLKLLEAGKKVDEYVMRSSSKFKSSVVVLNNLVEMYCKLGDTNGAREIFEQMGVRNLDSWNKMLLGLAENKEGEKALEIFSQMKGDGIRPD GSSFVGVLMACVCLGAEKEGQKHFESMSRDYGITPTVEHYEVFVDLLGRTGKIAEAKELVSNMPIDPNSRIWETLQKYSKARTQGQLGYPVSPPGLKLGD MKRAKDNINTNHRRVTSDRSKAYEKLRSLSKEVRDAGYVPDTRFVLHDLDQEAKEKALFYHSERLAIAYGLINTSPGTTLRIMKNLRICGDCHNFIKILS KIEDREFIVRDNKRFHHFKAGNCSCRDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15690			Tetratricopeptide repeat (TPR)...		Potri.014G038900 [exp]	0	1
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G157000 [exp]	3.00	0.9195
AT5G24490			30S ribosomal protein, putativ...		Potri.012G005800 [exp]	3.00	0.9363
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Potri.002G160650 [exp]	4.24	0.9393
AT4G26090		RPS2	RESISTANT TO P. SYRINGAE 2, NB...		Potri.006G147100 [exp]	4.24	0.9260
AT3G12930			Lojap-related protein (.1)		Potri.001G458600 [exp]	5.47	0.9286
AT4G01030			pentatricopeptide (PPR) repeat...		Potri.014G097000 [exp]	5.65	0.9211
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Potri.005G197900 [exp]	8.71	0.9379
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.008G106500 [exp]	9.16	0.8969
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.005G039300 [exp]	11.00	0.9139
AT5G61490			Uncharacterised conserved prot...		Potri.014G057200 [exp]	13.22	0.9250

Compare expression of checked genes

Potri.014G038900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.