Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47550 1535 / 0 SEC3A exocyst complex component sec3A (.1.2) AT1G47560 1483 / 0 SEC3B exocyst complex component sec3B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G131400 [exp] 1594 / 0 AT1G47550 1516 / 0.0 exocyst complex component sec3A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015090 [exp] 1545 / 0 AT1G47550 1605 / 0.0 exocyst complex component sec3A (.1.2) Lus10032737 [exp] 1536 / 0 AT1G47550 1599 / 0.0 exocyst complex component sec3A (.1.2) Lus10001022 [exp] 861 / 0 AT1G47550 1300 / 0.0 exocyst complex component sec3A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF04129 [poplar] [flax] Vps52 Vps52 / Sac2 family CL0266 [poplar] [flax] PH PF15277 [poplar] [flax] Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP2 binding PH
Representative CDS sequence Show only first row Show all	>Potri.014G039100.4 pacid=42762518 polypeptide=Potri.014G039100.4.p locus=Potri.014G039100 ID=Potri.014G039100.4.v4.1 annot-version=v4.1 ATGGCGAAATCGAGCGCCGACGACGAGGAGCTCAGGAGAGCCTGCGAAGCAGCAATTGAAGGCACAAAACAGAAGATCGTATTGTCGATCCGTGTCGCCA AGAGCCAAGGGATCTGGGGCAAATCTGGCAAATTAGGCCGTCACATGGCCAAACCTAGGGTTCTCGCTCTCTCCACAAAATCTAAGGGTCAGAGGACGAA AGCCTTTCTTCGAGTATTAAAATATTCAAATGGAGGAGTCCTCGAGCCGGCAAAGTTATACAAACTCAAGCATCTTTCGAAAGTTGAGGTTATAGCTAAT GATCCCAGCGGATGCACGTTTACCCTGGGATTTGATAACCTTAGAAGCCAGAGTGTTGCTCCGCCACAATGGACTATGCGCAATGTTGATGATAGGAACC GCCTTTTATTTTGCATCCTAAACATCTGTAAGGATGTACTTGGACGTCTTCCAAAAGTTGTTGGCATAGATGTTGTGGAAATGGCACTTTGGGCTAAGGA AAATACACCCACCGTTCCCAAGCAAACGAATCAGCAAGATGGAGGAGGGCCTGTTGAAGCTACAGTTACAGAAAGTGACTTGAAAGTGTCTGTTGAAAGA GAACTGGTCTCTCAAGCTGAGGAAGAGGACATGGAGGCTCTTCTTGGCACTTATGTAATGGGTATTGGTGAAGCAGAGGCATTTTCAGAAAGGTTGAAGC GTGAGCTTCTTGCCCTGGAAGCTGCAAATGTGCATGCCATTTTAGAAAGTGAACCTTTAGTAGAAGAGGTGTTGCAAGGGCTTGAGGCAGCAACAAATTG TGTTGATGACATGGATGAATGGCTAGGCATCTTCAACGTGAAACTTAGACATATGAGAGAAGACATTGAGTCGATAGAAACCCGCAATAACAAGTTGGAG ATGCAGTCTGTAAATAATGTATCACTCATTGAAGAACTCGATAAGCTTCTTGAACGACTGCGTGTCCCTTCTGAATATGCAGCTTGTCTAACAGGGGGTT CGTTTGATGAGGAACGCATGCTTCAAAACATTGAAGCATGTGAGTGGTTGACTGGTGCTTTACGTGGTCTTCAAGTGCCTAATTTGGATCCAATCTATGC AAATATGTGTGCTGTTAAAGAAAAGCGGACAGAACTTGAAAAATTAAAAACTACATTTGTCAGGAGAGCTTCTGAGTTCTTGAGAAACTACTTCGCAAGT TTGGTGGATTTCATGATAAGCGACAAGAGTTATTTTTCACAACGTGGACAGTTGAAGAGGCCTGATCATGCTGACTTAAGGTACAAATGCAGGACATATG CTCGCCTTCTACAGCATTTAAAGAGTCTCGATAAGAATTGCTTGGGTCCTTTGAGGAAAGCATATTGTAGCTCCCTTAACCTGCTTCTTCGCCGGGAGGC TCGTGAATTTGCTAATGAGCTTCGTGCTAGTACAAAAGCATCAAGAAATCCAACTGTCTGGCTGGAAGCTTCTACAGGCTCGAGTCAAAGTGCACATAAT ACAGATACATCTTCAGTTTCTGAAGCTTATGCAAAAATGCTGACAATATTCATCCCACTCCTTGTAGATGAGAGTTCTTTTTTTGCACACTTCATGTGCT TCGAGGTTCCTGCACTTGTTCCCCCAGGAGGTGTGGTTAATGGAAATAAAGGTGGGAATTACAATGATGCTGATGACGATGACGATGATGATTTGGGTAT TATGGACATTGATGAGAATGATGGCAAAGCTGGTAAAAATTCTGCAGATCTGGCAGCACTAAATGAATCTCTTCAGGATTTGCTTAATGGAATCCAAGAT GATTTTTATGCTGTGGTTGATTGGGCATACAAGATAGATCCCCTGCGCTGCATATCAATGCATGGGATTACAGAGCGCTATCTCTCTGGTCAGAAAGCTG ATGCTGCAGGATTTGTGCGTCTCTTGCTTGGTGACCTAGAGTCAAGAATTTCTATGCAATTCAGTCGTTTTGTTGATGAAGCTTGCCACCAAATTGAAAG AAATGAGCGTAATGTGCGGCAGACAGGGGTTTTATCCTACATCCCAAGATTTGCAACTCTTGCAACTCGTATGGAGCAGTATATCCAGGGACAATCTAGG GATTTGGTTGATCAGGCATACACAAAATTTGTTAGTATTATGTTTGTGACTTTGGAGAAAATTGCACAAACAGATCCAAAATATGCGGATGTCTTCCTTT TGGAAAACTATGCAGCATTTCAAAATAGCTTGTATGACCTAGCCAATGTTGTGCCAACTTTAGCCAAATTCTATCACCAGGCAAGCGAAGCTTATGAACA AGCTTGTACACGTCATATCAGCATGATTATTTTCTATCAATTTGAGAAACTTTTCCAGTTTGCTCGCAAGATTGAGGATTTGATGTACACCATAACACCA GAAGAGATCCCATTCCAGCTTGGATTGTCAAAAATGGATCTCCGAAAGATGTTAAAATCTAGTTTATCTGGGGTTGACAAGTCTATTAGTGCAATGTATA AGAGGTTACAGAAGAACTTAACTTCAGAAGAACTATTACCTTCTCTGTGGGATAAGTGCAAGAAAGAGTTCTTGGACAAGTATGAAAGTTTTGCACAACT CGTTGCAAAGATCTATCCCAACGAGAGCATCCCTTCAGTGTCAGAAATGAGAGAGCTTCTGGCTTCCATGTGA
AA sequence Show only first row Show all	>Potri.014G039100.4 pacid=42762518 polypeptide=Potri.014G039100.4.p locus=Potri.014G039100 ID=Potri.014G039100.4.v4.1 annot-version=v4.1 MAKSSADDEELRRACEAAIEGTKQKIVLSIRVAKSQGIWGKSGKLGRHMAKPRVLALSTKSKGQRTKAFLRVLKYSNGGVLEPAKLYKLKHLSKVEVIAN DPSGCTFTLGFDNLRSQSVAPPQWTMRNVDDRNRLLFCILNICKDVLGRLPKVVGIDVVEMALWAKENTPTVPKQTNQQDGGGPVEATVTESDLKVSVER ELVSQAEEEDMEALLGTYVMGIGEAEAFSERLKRELLALEAANVHAILESEPLVEEVLQGLEAATNCVDDMDEWLGIFNVKLRHMREDIESIETRNNKLE MQSVNNVSLIEELDKLLERLRVPSEYAACLTGGSFDEERMLQNIEACEWLTGALRGLQVPNLDPIYANMCAVKEKRTELEKLKTTFVRRASEFLRNYFAS LVDFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKASRNPTVWLEASTGSSQSAHN TDTSSVSEAYAKMLTIFIPLLVDESSFFAHFMCFEVPALVPPGGVVNGNKGGNYNDADDDDDDDLGIMDIDENDGKAGKNSADLAALNESLQDLLNGIQD DFYAVVDWAYKIDPLRCISMHGITERYLSGQKADAAGFVRLLLGDLESRISMQFSRFVDEACHQIERNERNVRQTGVLSYIPRFATLATRMEQYIQGQSR DLVDQAYTKFVSIMFVTLEKIAQTDPKYADVFLLENYAAFQNSLYDLANVVPTLAKFYHQASEAYEQACTRHISMIIFYQFEKLFQFARKIEDLMYTITP EEIPFQLGLSKMDLRKMLKSSLSGVDKSISAMYKRLQKNLTSEELLPSLWDKCKKEFLDKYESFAQLVAKIYPNESIPSVSEMRELLASM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47550		SEC3A	exocyst complex component sec3...		Potri.014G039100 [exp]	0	1
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.019G025200 [exp]	3.16	0.8695
AT1G31850			S-adenosyl-L-methionine-depend...		Potri.003G102400 [exp]	5.29	0.8450
AT2G41830			Uncharacterized protein (.1)		Potri.016G055100 [exp]	5.47	0.8467
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Potri.011G042400 [exp]	5.47	0.8415	FBL6
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.009G115100 [exp]	9.16	0.8627
AT3G48000		ALDH2A, ALDH2B4	aldehyde dehydrogenase 2A, ald...		Potri.012G078700 [exp]	9.38	0.8518	ALDH1.2
AT5G05570			transducin family protein / WD...		Potri.008G069700 [exp]	13.52	0.8553
AT2G26540		ATUROS, ATDUF3,...	ARABIDOPSIS THALIANA UROPORPHY...		Potri.014G034700 [exp]	17.20	0.8154
AT2G42320			nucleolar protein gar2-related...		Potri.006G056800 [exp]	18.16	0.8333
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.016G033200 [exp]	21.00	0.8433

Compare expression of checked genes

Potri.014G039100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.