Plant FIBer expression Database

Potri.014G039200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53220 103 / 6e-24 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G211800
[exp]
248 / 1e-75 ND /
Potri.015G022500
[exp]
109 / 4e-25 AT5G53220 165 / 1e-45 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001067
[exp]
95 / 3e-20 AT5G53220 162 / 8e-45 unknown protein
Lus10039326
[exp]
88 / 1e-19 AT5G53220 165 / 1e-49 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G039200.1 pacid=42764575 polypeptide=Potri.014G039200.1.p locus=Potri.014G039200 ID=Potri.014G039200.1.v4.1 annot-version=v4.1
ATGGCTTCTGGGTCACATTCACAAGGTGTTGAAGAAGGTGTTACTGATAAAAGTATAAAGGAAAAGGTTTGGTCTTTAAAATCAGCTTTCATGTCTCAGC
ATTTTGCGGAAATTGAAGGACTTTTGCTGGCCATGAAAGAAGAAACGGAAATTGAGAAGAAGTCATTGAAGAAAGAGAAGGAATCGATGGAAGAAAAGGC
TCGGAGCGAGAGATCGGAGAGATTGAAAGCTGAGATTGAGCTGAAGGAGTGTAAAAGAGAGTGTTTGCAGTTGAAGAAAGAGAAAGGAGGGTTTAATGAG
TTATTGAGGATTAGTGGAGAGGATAAGAGGATAATAAGAGAGCTCAGAGAGGAAATTTGTGAGTTGAAGTGTGCGAAATTGAAGGTAGAGACTGAAGTTG
ATGCGTACAAGAGTAAGTTTCAGGAGCTGGAGATGAGGGTTTTCCTTTTAGAGAAGGATTTGATGTTGTTGATTCCCGAGGAGCCTGTAAATAATGTTAG
GGTTTCTAGGGGGGTTGTGGAAGAGAAGGTTATTCTGAATGAGAATGTTGTCACTGTGAAAACTGAGGTGGTTTGCAGTGATTCCAATGATACTATTGCC
GTTGAGGCAAATGGTGATCCTAGGTCTCACTCACCAGAGAGCAGAAACGGTGATGTGGGGGGCCCAGGTTCGGTTTCTGGTGAGGGTGAGGGTTTGGGAG
AGAGGGCTATGATGGAAAATGGAAACGGCAGTGACAGGGTTGGTAATGTGAAAGCTGAGACGATTGCTGTTGATAATCATGAGAACATGGTTTTAGGGGC
AAGTGGAGGTTCTGGGAGCAACTTGCCGGAGAATGGAGATGGAAACATTGGTGCTTCAGGTGGATGGACACGTCAGTCACCAGACATTATAGAGATTAAT
GACAGTGATGATGACTCTTCTTCGAGTGCAACTTTGAGTAGAAAAAAATTGACCAAGCAAGGATATCAGCATGAAGCAGATTTAGGTCTGGAAGATGTCA
ACAATGAGACCATATTGCTCAAAAGAAAACGAAACTCCCCTTCAAATTCTAAGGATGATAGTGGTGGTATCAAAGAGCCCAGGGCAACAAAATGCCAAGT
GTTGATTCAAGGCCCTGAAAGTGCTCCTGTCAATTATTGTGCAGCAACAACCATGTTTTCTGGAAGTGATGACAGAAGAAATATTTTTAATCAATCAAGG
CAATCTCCAGCAATTTTGAGACAATGTGGGGAGAAAATTACGGTTGGACAGAATTCCCAAATACAGCGGGAGCTTGTTTTGGATGGTTCTGATGGTGAGC
AGAGTTCCGGCTCCTCCGACTCTGATGATTTTGATTTTCCAACTGACTTCTCTACAACGCAAGCAAATAGAATCCATAAAAAGTGGAAATCTGAAGCCGA
CATGGTTGCTGCTCTAGAGCAAGATGTAGAACTACGTTTAAGGGCTGTTTGTGCTCTGTTCGGACAGCAGGCTGCTGTGCAGAAATCATCGAACTTCGCG
TCAACTTTCCAAAATCAAGGATTTGACGAGGTTGATGCAGCCAGGGGTACTGCTTTGGTTGAGTTTCTCACCAATGGGGATCCCCAAGGGAAGCTGAAGA
AATCAACTTTGGAGTTGGCTGCAGATGACCCAGGAGGCTTCCGTGATTGCAAGAGACTGGCCATCAAGTATTCCAAGCAATTATTTGAGATGTGGCAGGT
GAAAGGGGATCCTCTGTTCTTCAAATGA
AA sequence
>Potri.014G039200.1 pacid=42764575 polypeptide=Potri.014G039200.1.p locus=Potri.014G039200 ID=Potri.014G039200.1.v4.1 annot-version=v4.1
MASGSHSQGVEEGVTDKSIKEKVWSLKSAFMSQHFAEIEGLLLAMKEETEIEKKSLKKEKESMEEKARSERSERLKAEIELKECKRECLQLKKEKGGFNE
LLRISGEDKRIIRELREEICELKCAKLKVETEVDAYKSKFQELEMRVFLLEKDLMLLIPEEPVNNVRVSRGVVEEKVILNENVVTVKTEVVCSDSNDTIA
VEANGDPRSHSPESRNGDVGGPGSVSGEGEGLGERAMMENGNGSDRVGNVKAETIAVDNHENMVLGASGGSGSNLPENGDGNIGASGGWTRQSPDIIEIN
DSDDDSSSSATLSRKKLTKQGYQHEADLGLEDVNNETILLKRKRNSPSNSKDDSGGIKEPRATKCQVLIQGPESAPVNYCAATTMFSGSDDRRNIFNQSR
QSPAILRQCGEKITVGQNSQIQRELVLDGSDGEQSSGSSDSDDFDFPTDFSTTQANRIHKKWKSEADMVAALEQDVELRLRAVCALFGQQAAVQKSSNFA
STFQNQGFDEVDAARGTALVEFLTNGDPQGKLKKSTLELAADDPGGFRDCKRLAIKYSKQLFEMWQVKGDPLFFK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G53220 unknown protein Potri.014G039200
[exp]
0 1
AT2G27980 Acyl-CoA N-acyltransferase wit... Potri.004G217600
[exp]
7.61 0.8842
AT5G53930 unknown protein Potri.011G115900
[exp]
8.83 0.8449
AT3G54390 Trihelix sequence-specific DNA binding ... Potri.001G028400
[exp]
9.74 0.7604
AT4G31880 unknown protein Potri.018G109600
[exp]
10.81 0.8769
AT4G14920 Acyl-CoA N-acyltransferase wit... Potri.008G152600
[exp]
11.22 0.8569
AT3G15120 P-loop containing nucleoside t... Potri.011G141400
[exp]
11.40 0.8794
AT3G25840 Protein kinase superfamily pro... Potri.010G126900
[exp]
16.27 0.8625
AT5G45300 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2... Potri.003G106500
[exp]
21.23 0.8011
Potri.017G058200
[exp]
22.29 0.8532
AT3G27870 ATPase E1-E2 type family prote... Potri.001G349100
[exp]
22.75 0.7057

Potri.014G039200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.