Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47510 418 / 4e-147 AT5PTASE11, 5PTASE11 ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 11, inositol polyphosphate 5-phosphatase 11 (.1.2) AT2G43900 115 / 3e-28 Endonuclease/exonuclease/phosphatase family protein (.1) AT1G65580 108 / 6e-26 FRA3 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) AT2G31830 107 / 2e-25 endonuclease/exonuclease/phosphatase family protein (.1.2) AT1G71710 105 / 5e-25 DNAse I-like superfamily protein (.1.2) AT1G34120 102 / 8e-24 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT1G05630 100 / 8e-23 AT5PTASE13, 5PTASE13 Endonuclease/exonuclease/phosphatase family protein (.1.2) AT4G18010 97 / 6e-22 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT5G65090 96 / 7e-22 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT2G37440 95 / 2e-21 DNAse I-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G145100 [exp] 113 / 2e-27 AT2G43900 1511 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Potri.008G079300 [exp] 111 / 6e-27 AT1G65580 1475 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Potri.005G197800 [exp] 103 / 4e-24 AT1G71710 658 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.003G088300 [exp] 96 / 2e-21 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.001G145900 [exp] 96 / 2e-21 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.005G078000 [exp] 94 / 4e-21 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.007G090200 [exp] 93 / 1e-20 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.010G177400 [exp] 93 / 1e-20 AT1G65580 1490 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Potri.017G074200 [exp] 92 / 2e-20 AT2G37440 328 / 8e-108 DNAse I-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008330 [exp] 109 / 4e-26 AT2G43900 1477 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Lus10040107 [exp] 104 / 2e-24 AT4G18010 638 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10003010 [exp] 103 / 4e-24 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10011041 [exp] 102 / 6e-24 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10008934 [exp] 98 / 1e-23 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2) Lus10028884 [exp] 98 / 2e-22 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028727 [exp] 98 / 3e-22 AT1G71710 674 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10027073 [exp] 97 / 6e-22 AT2G43900 1455 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Lus10034857 [exp] 97 / 6e-22 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10033398 [exp] 96 / 8e-22 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.014G039800.1 pacid=42763192 polypeptide=Potri.014G039800.1.p locus=Potri.014G039800 ID=Potri.014G039800.1.v4.1 annot-version=v4.1 ATGGGAAATTGGAACACAACTTGTGCTTGTAAGAGATCTAAGTTGATGAGGAAGCAAATGGATTCCATGAATCATAATACTCATCATGAAGGAATAAGGA CTGTAAAGGTGAACAAGGTCTGCGACTTCTCTGGAAACTCAGACCTTTGCATTTGCGCAGTGACCTGGAACATGAATGGAAAGGTGGTTTATGAAGACTT GGTGGAGCTGGTTGGGAGCAACTCCAAGTCTGATCTACTGGTGGTAGGTTTGCAAGAGGTGCCTCGGAAAAACATCGCACGGTTATTGGAAACAGCACTT GTGGATACTCATGTCCTGCTAGGAAAGGCAATCATGCAATCTCTTCAACTTTATGTATTTGGACCTCAGAACTCGGGGTTTTCCATCAAAGAATTGAAGG TGGATAAGCATTCTGTTGGTGGTTGTGGAGGATTAATTAGGAGAAAGAAAGGAGCTGTGGCCATCTGCATGAGCTACAATGGCATCCGAATGGTATTCAT CTCTTGCCATCTTTCTGCTCATGCTCGTAACGTGGAAGAGAGGAATTCACAATGCAGACATATATCACACAACCTTTTCTCTAAGTATATGAATCCTTAC AGCAAGCCTGCTCAAGTCACGGTATGGCTGGGAGATCTTAACTACAGAATACAAGGGATAGAAACACATCCAGTCAGAAATCTTATACAGAAAAACCTTC ACAGATTCCTCACCAGCAAAGATCAACTTCTACAAGAAGCTGAAAGAGGACAGGTGTTTGATGGATACTGCGAAGGGACATTGACCTTTAAACCAACATA CAAGTACGATGTTGGAAGCAGCAATTACGATACAAGTTACAAGGTGCGAGTCCCATCATGGACAGATCGAATCTTGTTCAAGATTCAAGACATGGAGGAA ATCAGGGCAAGTTTGCATTCTTACGAGTCAGTTGATGACATTCACAGTTCGGATCACAAGCCAGTGAAAGCTCACCTCTGCTTGAAAGTTAATGAACAGC CATAA
AA sequence Show only first row Show all	>Potri.014G039800.1 pacid=42763192 polypeptide=Potri.014G039800.1.p locus=Potri.014G039800 ID=Potri.014G039800.1.v4.1 annot-version=v4.1 MGNWNTTCACKRSKLMRKQMDSMNHNTHHEGIRTVKVNKVCDFSGNSDLCICAVTWNMNGKVVYEDLVELVGSNSKSDLLVVGLQEVPRKNIARLLETAL VDTHVLLGKAIMQSLQLYVFGPQNSGFSIKELKVDKHSVGGCGGLIRRKKGAVAICMSYNGIRMVFISCHLSAHARNVEERNSQCRHISHNLFSKYMNPY SKPAQVTVWLGDLNYRIQGIETHPVRNLIQKNLHRFLTSKDQLLQEAERGQVFDGYCEGTLTFKPTYKYDVGSSNYDTSYKVRVPSWTDRILFKIQDMEE IRASLHSYESVDDIHSSDHKPVKAHLCLKVNEQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47510		AT5PTASE11, 5PT...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.014G039800 [exp]	0	1
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095100 [exp]	1.00	0.9559
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.005G177700 [exp]	3.00	0.9126	ENOD8.3
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088600 [exp]	4.47	0.9288
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088680 [exp]	9.38	0.9207
AT5G67370			Protein of unknown function (D...		Potri.007G052500 [exp]	10.48	0.9113
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.001G093300 [exp]	11.09	0.9229
AT1G79510			Uncharacterized conserved prot...		Potri.010G173000 [exp]	14.49	0.9183
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Potri.017G032766 [exp]	16.27	0.9205
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.007G140600 [exp]	20.90	0.8804
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032700 [exp]	21.97	0.9180

Compare expression of checked genes

Potri.014G039800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.