Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19270 654 / 0 DA1 DA1 (.1) AT4G36860 593 / 0 DAR1 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) AT2G39830 488 / 1e-169 LRD3, DAR2 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) AT5G66620 371 / 3e-122 DAR6 DA1-related protein 6 (.1) AT5G66610 352 / 4e-116 DAR7 DA1-related protein 7 (.1.2) AT5G66630 318 / 3e-101 DAR5 DA1-related protein 5 (.1) AT5G17890 326 / 6e-99 CHS3, DAR4 CHILLING SENSITIVE 3, DA1-related protein 4 (.1) AT5G66640 286 / 9e-92 DAR3 DA1-related protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G132700 [exp] 868 / 0 AT1G19270 669 / 0.0 DA1 (.1) Potri.005G128900 [exp] 638 / 0 AT4G36860 696 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.007G032500 [exp] 618 / 0 AT4G36860 675 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.005G128800 [exp] 617 / 0 AT4G36860 662 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.010G197500 [exp] 508 / 7e-178 AT2G39830 688 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Potri.T124504 [exp] 181 / 3e-53 AT1G19270 182 / 3e-53 DA1 (.1) Potri.009G111446 [exp] 92 / 2e-22 AT2G39830 92 / 7e-23 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032736 [exp] 732 / 0 AT1G19270 628 / 0.0 DA1 (.1) Lus10010033 [exp] 729 / 0 AT1G19270 657 / 0.0 DA1 (.1) Lus10016298 [exp] 722 / 0 AT1G19270 646 / 0.0 DA1 (.1) Lus10018789 [exp] 677 / 0 AT1G19270 575 / 0.0 DA1 (.1) Lus10022486 [exp] 613 / 0 AT4G36860 679 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10016791 [exp] 601 / 0 AT4G36860 669 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10040258 [exp] 506 / 1e-173 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10004690 [exp] 414 / 1e-140 AT2G39830 560 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10000138 [exp] 221 / 3e-70 AT4G36860 203 / 2e-63 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00412 [poplar] [flax] LIM LIM domain CL0126 [poplar] [flax] Peptidase_MA PF12315 [poplar] [flax] DA1-like Protein DA1
Representative CDS sequence Show only first row Show all	>Potri.014G039900.3 pacid=42762441 polypeptide=Potri.014G039900.3.p locus=Potri.014G039900 ID=Potri.014G039900.3.v4.1 annot-version=v4.1 ATGGGTTGGCTTAGCAAGATTTTTAAAGGGTCCCGCCATAATATTTCAAGAGGGCATTATCATGGGAATCGTGGACAGGATGCTAATTATAATGCGCCTT CTACTTCAAGGGAAGCATGGTTGGAGCAGGAAAATGAAGATATAGATCGTGCTATTGCATTATCCCTTTTAGAGGACAGTCAAAATGGAAACATTGTCAT TGATAATGAGATTCAAGTAAAAGAAGATGAACAACTTGCCAAAGCCTTACAAGAAAGTTTGAATGTTGAATCTCCTACTCGATATGGAAATGGAATTCCA TATCAAGGGAACACATATCAGCCTTATCCTGTTCACTTTCCAATGGGGTTCAGGATATGCGCTGGTTGCAATACAGAGATTGGCCAGGGAAGATTTCTAA ATTGCCTCAATGCATTTTGGCATCCAGAATGTTTCCGTTGCCATGCTTGCAGCCTACCAATTTCTGACAATGAGTTCTCAATGACTGGAAATCACCCTTA TCATAAGTCTTGCTACAAAGAGCGTTACCACCCACGATGTGAAGTCTGTAAACTCTTTATTCCAACAAACCCAGCTGGTCTTATTGAATATAGGGCAAGT CCTTTTTGGACCCAGAAGTACTGTCCTTCTCACGAACATGATGGTACTCCTCGGTGCTGCAGCTGTGAGCGAATGGAGCCAAGAGACACTGGATATATTT CCCTTAATGATGGTCGGAAGCTCTGTCTTGAGTGCCTGGACTCAGCAATCATGGATACCAAGGAGTGCCAACCTCTTTATCTTGATATACAAGAATTTTA TGAACGTTTAAATATGAAAGTGGAGCAGCATGTTCCACTACTCTTGGTTGAAAGACAAGCACTAAATGAAGCCCGGGGTGGAGAAAAAAATGGCCATTAC CACATACCAGAGACTAGAGGACTTTGCCTTTCTGAGGAACAAACCATTAGCACTGTATCAAGGCGACCAAGGTTTGGAGCAGGGAACCGAGCCATGGGTA TGATAACAGAGCCTTACAAACTAACACGTCGTTGTGAGGTTACTGCAATTCTGATTTTGTATGGCCTCCCAAGGTTGCTTACGGGGTCAATCCTAGCTCA TGAGATGATGCATGCATGGATGCGGCTGAAAGGTATCCAAACTCTCAGTCAAGATGTTGAAGAGGGCATTTGTCAGGTGCTTGCACACATGTGGTTAGAT TCGGAGCTCAGATCCACTTCAGGCAGCAATGTTGCATCATCCTCTGCTTCCAGAACAACAAAAAAGGGTACAAGATCTCCATTTGAGAGAAAGCTTGGGG AGTATTTCAAGCATCAAATTGAATCAGATACTTCCCCGGTGTATGGAAATGGATATAGGGCTGGTCAGCAAGCAGTGAGGAAATATGGCCTCGAAAGGAC ACTTGATCATATACGAATGACAGGGAAGTTTCCATATTGA
AA sequence Show only first row Show all	>Potri.014G039900.3 pacid=42762441 polypeptide=Potri.014G039900.3.p locus=Potri.014G039900 ID=Potri.014G039900.3.v4.1 annot-version=v4.1 MGWLSKIFKGSRHNISRGHYHGNRGQDANYNAPSTSREAWLEQENEDIDRAIALSLLEDSQNGNIVIDNEIQVKEDEQLAKALQESLNVESPTRYGNGIP YQGNTYQPYPVHFPMGFRICAGCNTEIGQGRFLNCLNAFWHPECFRCHACSLPISDNEFSMTGNHPYHKSCYKERYHPRCEVCKLFIPTNPAGLIEYRAS PFWTQKYCPSHEHDGTPRCCSCERMEPRDTGYISLNDGRKLCLECLDSAIMDTKECQPLYLDIQEFYERLNMKVEQHVPLLLVERQALNEARGGEKNGHY HIPETRGLCLSEEQTISTVSRRPRFGAGNRAMGMITEPYKLTRRCEVTAILILYGLPRLLTGSILAHEMMHAWMRLKGIQTLSQDVEEGICQVLAHMWLD SELRSTSGSNVASSSASRTTKKGTRSPFERKLGEYFKHQIESDTSPVYGNGYRAGQQAVRKYGLERTLDHIRMTGKFPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19270		DA1	DA1 (.1)		Potri.014G039900 [exp]	0	1
AT3G52460			hydroxyproline-rich glycoprote...		Potri.009G020000 [exp]	3.00	0.8198
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Potri.008G048400 [exp]	3.16	0.8193
AT1G61190			LRR and NB-ARC domains-contain...		Potri.019G014358 [exp]	4.00	0.8448
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Potri.008G085000 [exp]	4.58	0.8337
AT5G66210		CPK28	calcium-dependent protein kina...		Potri.005G113600 [exp]	5.19	0.8475	CPK18
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Potri.004G071100 [exp]	12.84	0.7966
AT2G04305			Magnesium transporter CorA-lik...		Potri.001G285300 [exp]	13.03	0.7890
AT2G19710			Regulator of Vps4 activity in ...		Potri.006G149800 [exp]	13.03	0.8292
AT5G13590			unknown protein		Potri.010G213800 [exp]	13.74	0.7837
AT5G57580			Calmodulin-binding protein (.1...		Potri.011G043300 [exp]	16.37	0.8328	CBP60.12

Compare expression of checked genes

Potri.014G039900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.