Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23770 344 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 201 / 1e-56 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT3G01840 193 / 2e-53 Protein kinase superfamily protein (.1) AT4G02010 181 / 1e-48 Protein kinase superfamily protein (.1) AT1G49730 180 / 2e-48 Protein kinase superfamily protein (.1.2.3.4) AT2G37710 179 / 2e-48 RLK receptor lectin kinase (.1) AT1G16670 172 / 7e-48 Protein kinase superfamily protein (.1) AT3G19300 177 / 1e-47 Protein kinase superfamily protein (.1) AT5G15730 173 / 1e-47 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT4G29990 177 / 7e-47 Leucine-rich repeat transmembrane protein kinase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G128300 [exp] 566 / 0 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 419 / 3e-139 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032100 [exp] 411 / 2e-135 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 397 / 1e-130 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.008G160600 [exp] 295 / 1e-91 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 294 / 3e-91 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.009G010300 [exp] 247 / 2e-73 AT2G23770 234 / 3e-68 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032300 [exp] 247 / 3e-73 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1) Potri.001G332800 [exp] 248 / 4e-73 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016299 [exp] 543 / 0 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10018788 [exp] 530 / 0 AT2G23770 312 / 3e-97 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10032735 [exp] 528 / 0 AT2G23770 305 / 1e-94 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022488 [exp] 525 / 2e-180 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10000577 [exp] 372 / 2e-120 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10019661 [exp] 368 / 4e-119 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016794 [exp] 298 / 3e-96 AT2G23770 219 / 2e-66 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016793 [exp] 252 / 2e-75 AT3G21630 222 / 9e-64 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10008586 [exp] 251 / 4e-74 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10004504 [exp] 249 / 1e-73 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0187 [poplar] [flax] LysM PF01476 [poplar] [flax] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Potri.014G040000.1 pacid=42764377 polypeptide=Potri.014G040000.1.p locus=Potri.014G040000 ID=Potri.014G040000.1.v4.1 annot-version=v4.1 ATGGCAAACTTCTTTCTCAGTTTGCTCACTCTCAGTTTTCTCACTTCATATGCTAATGCTCAACAAAACTACTCGAAGGATTCAGCACTAGACTGCAACG CCAATGATGATGCAGGACCATCCTCTGCATTTCTTTACACCTACAATGGCCAGGACCAATCTTGCCAGGCCTTTCTGATCTTCAAATCTCAACCTTCTTT TAACTCGGTGCCTTCAATCTCAGCCCTTACGTCGGCAAACCAAGAAGAGCTGGCAAGAATCAACAATGTTACAAGGCTATCAGAGTTCCCTACCAACAAT GAGGTGATTGTTCCTGTAAATTGTTTTTGTTTTGGCCAATATTACCAGGCCAACACTACAATTCAGGTCACGACTACTCGTGGAACCTACTATGTCATAG CGAATGAAACTTACGAGGGATTATCTACTTGTGCTGCGCTTAAGCATTTGAATATACATGGTGAATATGATTTGTTGCCTGGTGAGGAACTGCAAGTACC ACTTCGATGTGCTTGCCCTACAACGAATCAAATGATAAGAGGAACAAAGTATCTAGTGACTTACCCTCTTAGCTCAGATGATAACATTCCTGATATTGCT GACAGATTCAAAGTAAGCACCAAGGATATACTTGATGCAAATGGTATGGAAGAAAATCCAACTCTTTATCCTGATACAACAATTCTCATACCTCTGCCTA CTCAACCTACAAGTTCACAAACAATAATTCACAGCAACCCAAACATTTCTCCTCCATCAGCTTTGAGTCCTAGAAATAGAGGATCAAAGAAAAAACATTA TGAGTCTGCTGGGCTTGCTGCAGCTTGCTCTTTGCTAGTCATCAGTATCATTACAGCTGTCGTTTTTCTCTCTTGCAAAAAGACAAGAGAAAAGGTTTCT GGGAGAGGTAGAGAAAGAAAACAGGCAGTGCCAGAAGACATTCGTGTCGAAATTGCAAGCTATGAGCAAGTTTTAAAAGTCTTCAAATTCGAAGAGGTAA GGAAAGCTACTGAAAATCTCAGTTCAGAAAGTAGAATAAATGGCTCTGTGTATCGTGGAGAGTTTGGTGGGGAGATCTTAGCTGTCAAGAAGATGAGTAG AGATGTAACAAAGGAAGTGAACATTTTGAAGAGGATCAACCACTTCAATTTGATTAAGCTTGAAGGTGTATGCGAAAATCGTGGCTGTTTCTACCTTGTT TTGGAGTATATGGAAAATGGGTCCCTTAGAGAGTGGCTGTCCTGTAAAAAGTTCGAAGAAACTGGAAATTGGGCACAGAGAATTCAGATTGCTCTGGATG TTGCTAATGGACTTTACTATCTTCACAGCTTCACCGAACCTGCCTATGTGCACAAGGACATCAAAAGCAGCAATGTTCTGTTAAACGGCAATCTAAGGGC CAAGATTGCAAATTTCAGTCTTGCGAGAGCAGCGACAAGCGCTGCCATGACAAAACATGTTGTGGGCTCTATAGGTTACATGGCGCCTGAGTACGTACGG GAAGGACAAGTGACCCCCAAGATTGATGTTTATGCTTTTGGAGTCATTTTGCTGGAACTGATCACAGGGAAAGATGCTGTTTTCACACAGGATGGCAGGG AAGCCCTCCTTTCAACGGAAATATTTTCTATCATGGAGAATAAAAACCCTGAAGTTGAGCTGGATTTCTTTGTCGATCCTGCTCTAAAAGGAAGTTGTGG AACAAACTTCGCATTATGCTTGGCTAAAGTAAGCGTAGCCTGCTTGATGAAAGAACCAGCAAGGAGACCTAGTATGGAGGAAGTGGTATCAGTTCTGTTG AAAATTCAGGCAAATGTACAGAAATCATAA
AA sequence Show only first row Show all	>Potri.014G040000.1 pacid=42764377 polypeptide=Potri.014G040000.1.p locus=Potri.014G040000 ID=Potri.014G040000.1.v4.1 annot-version=v4.1 MANFFLSLLTLSFLTSYANAQQNYSKDSALDCNANDDAGPSSAFLYTYNGQDQSCQAFLIFKSQPSFNSVPSISALTSANQEELARINNVTRLSEFPTNN EVIVPVNCFCFGQYYQANTTIQVTTTRGTYYVIANETYEGLSTCAALKHLNIHGEYDLLPGEELQVPLRCACPTTNQMIRGTKYLVTYPLSSDDNIPDIA DRFKVSTKDILDANGMEENPTLYPDTTILIPLPTQPTSSQTIIHSNPNISPPSALSPRNRGSKKKHYESAGLAAACSLLVISIITAVVFLSCKKTREKVS GRGRERKQAVPEDIRVEIASYEQVLKVFKFEEVRKATENLSSESRINGSVYRGEFGGEILAVKKMSRDVTKEVNILKRINHFNLIKLEGVCENRGCFYLV LEYMENGSLREWLSCKKFEETGNWAQRIQIALDVANGLYYLHSFTEPAYVHKDIKSSNVLLNGNLRAKIANFSLARAATSAAMTKHVVGSIGYMAPEYVR EGQVTPKIDVYAFGVILLELITGKDAVFTQDGREALLSTEIFSIMENKNPEVELDFFVDPALKGSCGTNFALCLAKVSVACLMKEPARRPSMEEVVSVLL KIQANVQKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23770			protein kinase family protein ...		Potri.014G040000 [exp]	0	1
AT3G59080			Eukaryotic aspartyl protease f...		Potri.005G204600 [exp]	6.48	0.7955
AT1G68710			ATPase E1-E2 type family prote...		Potri.010G132700 [exp]	14.76	0.7967
AT2G38790			unknown protein		Potri.008G025100 [exp]	28.01	0.7907
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.005G143900 [exp]	28.14	0.7946	IFS1.45,CYP81S8
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.005G093200 [exp]	29.39	0.7653	NCPGS.4
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.008G014600 [exp]	41.13	0.7769
AT1G06135			unknown protein		Potri.013G043600 [exp]	41.71	0.7517
AT2G38790			unknown protein		Potri.008G025200 [exp]	43.12	0.7640
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187400 [exp]	51.48	0.7622
AT1G30755			Protein of unknown function (D...		Potri.002G021400 [exp]	51.49	0.7608

Compare expression of checked genes

Potri.014G040000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.