Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61120 127 / 9e-32 unknown protein AT5G61090 99 / 1e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G02890 84 / 1e-16 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G16680 71 / 1e-12 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G61100 54 / 8e-08 unknown protein AT1G43770 55 / 1e-07 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G61110 50 / 5e-07 zinc ion binding (.1) AT4G17850 47 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G041900 [exp] 71 / 1e-12 AT5G16680 288 / 6e-79 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G077900 [exp] 69 / 6e-12 AT5G16680 536 / 1e-165 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.007G110400 [exp] 67 / 9e-12 AT1G43770 135 / 1e-35 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.003G091000 [exp] 66 / 9e-11 AT3G02890 177 / 3e-45 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.005G189400 [exp] 64 / 2e-10 AT1G43770 142 / 1e-37 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G173200 [exp] 59 / 5e-09 AT1G43770 187 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035396 [exp] 147 / 2e-39 AT5G61120 76 / 4e-15 unknown protein Lus10030998 [exp] 142 / 1e-37 AT5G61120 71 / 1e-13 unknown protein Lus10009530 [exp] 79 / 8e-15 AT5G16680 395 / 5e-115 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10020350 [exp] 72 / 1e-12 AT3G02890 439 / 2e-131 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028603 [exp] 70 / 3e-12 AT1G43770 106 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G040100.3 pacid=42762414 polypeptide=Potri.014G040100.3.p locus=Potri.014G040100 ID=Potri.014G040100.3.v4.1 annot-version=v4.1 ATGGAGGAAAAGACCCACCTTGACCTGGTGAAGCTCTGTGACATATGTGGTAATGGTGGTTTCGGGGAGCTTATAGCAACCTGCTCTAAATGTGGAATAT CTCAAGAACATCTTTATTGCACGAGGGTTTTGTTCAAGGATACCATAGAAGATTGGATATGTGAAACGTGTACATCATGCACAGACATAGCTTCACCAGT TTCGCTAGGATGTGGCAGGAAGGAAGACTCACAGAATTGCTCTGATGCTTTGCGACATGAATCACATGATGCTCTGATAATTTCTGATGATTTGCGAGGG CCGCATCATTCTAAAAGGCAGCATGCAGTAAAATCTGGAAAAGTGAAGTTTCTTACTGCTGAAGAAGTCATTAGATTATCATCAGGAACCACTAAAAAGG AACCTTCTTCAAGAAGTAACTTCAGATGCACAACTAGTCATTCTTCTGTCACTTCAAAAATCTCTCCTACCAGGGTGCCTCCGAACCCCCCCAGAATTAT CCCTTCATGTCCTATAAAGCCCTATGGACATGGCAGAATGCAAACCAGTTCAACAACTAATAATCAACAGTCTCCGAGAACATCAAAAGGAAAGAACTCT TGCCCCGTTACTGTAGCTATAAATTCTGATGTTGAAGAGAGAGACCTGCCGAATATTCTGCCTAAGCTTAGGCTGTATCATCCTCATTTCCCTGCTTTGC ATGTGACTTGGAAGGGAGGCTTCAAGTTTGATGTTGCCACACAACAAATGTTTTATGGTGGATTCCAGGCTCAGCTGCCATGCAGAGTACATAGGAAAGC TTACGAGTCTTCACGGAAGATTCCATTAATCCTTCAAGTTAAATTACTTCCACAATGTGATATTTGGGAAGACCTATTCCAAGACAGTTGTCCAGATTTC TGTGATATTGCACTTTATTTTTTCCCTTCTGCTAATATTGAGAGATCAAAAGAGAACCATGCTAGCCTATTCCGGCTTATGGAAACAGAAAATGCAGTGA TGAGAAGTTACATTGATGGTGTAGAGTTGTTGATATTCACATCTAAACAGCTGCATGTGGAATCGCAGGATATTATTGCAAGGTCAGGCATGGGAAACTT CTTATGGGGAGTTTTCCGGCATGCAAAACATGATAAAATTATTTGTAACAAATTCCCTTCATTGGCTACTGCTTTGGGAAGTGAACATGATGACCATGCC AACATGGGTAGAGATGAGGCTGTTGACATGGAAATTGACATGGTAGGTGGAACTGTTATAGGTAGGATTGATGTGGCTGTTTCAAAAGAATCATCCAGTA GGTTCTGTGTGGAGTCTAACAAGGAAACTGTTGATGAAGATGCCTCGAAATCCAATATCTTATATTCTTTCAAGGATTTGGATTCCACTGTCGAACATGC AATTTCTAAACCTGAACAAGCTCACCATTTAGTTGCTAAGAAGATAAGAGGTGATATGGCCTCTCTGGATCCCTTGCAGAGCTGTCTTGGAAAGTTATCT GATGCTATGGATGATGCAGGTGTTCCCCCAGGATTTGTAGAGTCGTTGAAGCTGAAATTCAGCAACATTTTACAGGAGAACGCACTTGAGAGGGTGAATG GAGATGGAGATAGATATCTTAAATCTTACCCTATGGAGGTTAAAACAAAATTGCAAAATTCTGATAATCTTGAACAAGATTTCAGTCCTAAATTGCATAC CAAATCACCAAGGCAGGATCCGCAGATGATGGAGTCAGGCTGA
AA sequence Show only first row Show all	>Potri.014G040100.3 pacid=42762414 polypeptide=Potri.014G040100.3.p locus=Potri.014G040100 ID=Potri.014G040100.3.v4.1 annot-version=v4.1 MEEKTHLDLVKLCDICGNGGFGELIATCSKCGISQEHLYCTRVLFKDTIEDWICETCTSCTDIASPVSLGCGRKEDSQNCSDALRHESHDALIISDDLRG PHHSKRQHAVKSGKVKFLTAEEVIRLSSGTTKKEPSSRSNFRCTTSHSSVTSKISPTRVPPNPPRIIPSCPIKPYGHGRMQTSSTTNNQQSPRTSKGKNS CPVTVAINSDVEERDLPNILPKLRLYHPHFPALHVTWKGGFKFDVATQQMFYGGFQAQLPCRVHRKAYESSRKIPLILQVKLLPQCDIWEDLFQDSCPDF CDIALYFFPSANIERSKENHASLFRLMETENAVMRSYIDGVELLIFTSKQLHVESQDIIARSGMGNFLWGVFRHAKHDKIICNKFPSLATALGSEHDDHA NMGRDEAVDMEIDMVGGTVIGRIDVAVSKESSSRFCVESNKETVDEDASKSNILYSFKDLDSTVEHAISKPEQAHHLVAKKIRGDMASLDPLQSCLGKLS DAMDDAGVPPGFVESLKLKFSNILQENALERVNGDGDRYLKSYPMEVKTKLQNSDNLEQDFSPKLHTKSPRQDPQMMESG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61120			unknown protein		Potri.014G040100 [exp]	0	1
AT1G03990			Long-chain fatty alcohol dehyd...		Potri.002G259700 [exp]	3.00	0.7037
AT5G49525			unknown protein		Potri.013G007500 [exp]	37.73	0.6823
AT5G65550			UDP-Glycosyltransferase superf...		Potri.008G024801 [exp]	42.20	0.6627
AT2G31305		INH3	inhibitor-3 (.1)		Potri.007G101900 [exp]	45.69	0.6381
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Potri.003G053900 [exp]	54.44	0.6443
					Potri.014G003175 [exp]	66.67	0.6163
					Potri.005G221050 [exp]	69.45	0.6450
					Potri.005G038200 [exp]	79.24	0.6387
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.015G027800 [exp]	90.57	0.6278
AT4G10270			Wound-responsive family protei...		Potri.019G117100 [exp]	105.92	0.6117

Compare expression of checked genes

Potri.014G040100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.