Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19290 882 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 342 / 6e-103 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 328 / 2e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 293 / 4e-86 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 293 / 1e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 284 / 3e-83 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31840 285 / 7e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G05670 282 / 2e-82 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT4G19440 282 / 8e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G14770 284 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105400 [exp] 394 / 6e-121 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G368700 [exp] 335 / 9e-99 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 322 / 4e-96 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G236800 [exp] 322 / 2e-95 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 317 / 3e-94 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G043101 [exp] 313 / 1e-91 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 305 / 2e-91 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G234500 [exp] 290 / 5e-85 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 292 / 1e-83 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008185 [exp] 1212 / 0 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027974 [exp] 697 / 0 AT1G19290 480 / 1e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 333 / 4e-100 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 328 / 2e-98 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 328 / 9e-98 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 326 / 7e-97 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026206 [exp] 324 / 9e-95 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006373 [exp] 305 / 2e-90 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 303 / 8e-90 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 309 / 9e-90 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.014G040200.1 pacid=42763392 polypeptide=Potri.014G040200.1.p locus=Potri.014G040200 ID=Potri.014G040200.1.v4.1 annot-version=v4.1 ATGCTCAGGCACTCTCCAATCCCTTCCCCTTCTCCCCTCCTCTCCTCTCTCCGCAAATCAATCCACTGGAAACCCCGCCACGAATCCAACCTCTCCCGAC CCGAACTCCACGAGCGCATCTCTCGTCTCCTAATCCTACGTCGTTTTGACGCCCTCGAAAACCTCAACTTCCATTTCTCCGATAGCCTTGTAGACTCCAT CCTCGTTAAGCTCAAGTTAAATCCTGAAGCTTGTCTTAATTTCTTCCAATTAGCCGCAAAACAACCTAATTTTACACCGAGCGTTAAATCTTACTGTAAA CTTGTTCACATTCTATCTCGAGCTCGAATGTACGATGAGACCAGATCGTATTTAAATGAACTGGCTTCTCTTTGTAAGAATAATTACACTTCTTTTCTTG TTCTTGATGAGCTTGTTAGGGTTTATAAAGACTTTAAGTTTTCGCCGTTAGTTTTTGACATGATTTTGAAAGTATATGCAGAAAAAGGAATGGTAAAGAA TGCACTCCACGTGTTTGATAATATGGGGAAGTACGGTCGTAAACCGAGTTTACGGTCTTGTAATAGTTTGTTGAGTAATTTAGTTAAAAGGGGCGAAAGT TATAGTGCAGTTCTTGTTTATGATCAAATGAGAAGGTTGGATATTGTGCCTGATGTTTTTACTTGTGCAATTATGGTTAACGCATATTGTAAGGCGGGGA AGGTGGAGAGAGCGGTGGAATTTGTTAGGGAAATGGAGAAGTTAGGGTTTGAATTGAATGCAGTTAGTTACAATAGTTTGGTTGATGGATATGTTAGTCT GGGAGATATAGAGGGGGCGAAAGGGGTTTTGAAGTTTATGAGTGAAAAGGGGGTTATGAGAAATAAGGTTACGTTGACGTTGTTGATCAAGGGTTATTGT AAACAATGTAAGGTGGAGGAAGCAGAGAAGGTGCTTAGAGAAATGGAGAAAGAGGATGGAGTGGTTGTTGATGAGTATGCTTATGGTGCGCTGATAGATG GGTATTGTAAAGTTGGTAAAATGGGTGATGCTATCAGGGTTAGGGATGAGATGCTGAAGGTAGGATTGAAGATGAATTTATTTGTTTGCAATTCTTTGAT TAACGGGTATTGTAAAAATGGTCAAGTTCACGAGGGAGAGAGGTTGTTGATGTGTATGAGAAAGTTGGATTTAAAGCCAGATTCTTATAGTTATTGTACT CTTGTGGATGGATATTGTAGAGATGGTCTCAGTAGCAAAGCTTTCAATGTTTGCGATCAGATGCTTCGGAAGGGGATTGAACCAACTGTTGTAACTTATA ATACTCTTCTCAAAGGCTTATGTCGTTTTGGTGATTACAAGGATGCTTTGCGCCTTTGGCATTTGATGCTACAGAGAGGGGTCACTCCTAATGAGGTTGG CTATTGTACTCTACTAGACGGACTTTTCAAGATGGGAGATTTTTCGAGGGCTTTAACCCTGTGGGATGATATTCTAGCTAGAGGTATAAACAAAAGCATA TACGCTTTCAATACAATGATCAATGGGTTGTGTAAGATGGGTGAAATGGATGGCGCAAAGGAGACTTTTAAAAGAATGGAGGAATTGGGCTGTAAACCTG ATGGAATAACATATAGAACCCTAAGTGATGGGTATTGTAAAGTTGGAAACGTGGAAGAAGCTTTTAAAATTAAAGAGAAAATGGAAAAGGAAGAAATTTT TCCTTCCATTGAAATGTATAATTCCCTAATTGTTGGACTTTTTACTTCCAAGAAAATAAGTAAATTGATAGATCTTCTTGCAGAGATGGACACTAGGGGA TTGTCCCCTAATGTTGTTACTTATGGAGCCCTTATTGCTGGTTGGTGTGATCAAGGTAGACTGGATAAAGCTTTTAGTGCATATTTTGAGATGATTGGGA AGGGGTTCGCTCCCAATGTAATTATTTGCAGCAAAATTGTCAGTAGCCTCTACAGGCTTGGTAGGATTGATGAAGCAAATATGCTCTTGCAGAAGATGGT GGATTTTGATCTTGTTTTAGATCACAGATGTTTGGAAGATTTTCAGAATGCTGATATTAGAAAACTAGACTGCTGGAAAATTGCTGATACCCTCGATGAA AGTGCTATTAAATTTTCTCTCCCCAACAATGTGGTGTACAATATAGCTATGGCAGGGCTTTGCAAGTCTGGGAAGGTTAATGATGCAAGGAGATTTTTCT TGGGCCTGTCGCACGGAAGCTTTACTCCTGATAACTTCACATACTGCACCTTAATCCATGGCTTTTCAGCTGCTGGTTATGTGAATGAAGCTTTTAACTT GCGTGATGAGATGGTGAATAAGGGTCTTGTTCCAAACATAACTACATACAATGCTCTACTGAATGGCCTTTGTAAGTCGGGATATCTGGATAGAGCACGG AGACTTTTCGATAAACTTCACCTGAAGGGATTAATTCCAAATGTTGTTACTTACAATATATTGATCGATGGCTACTGTAAAAGTGGCAGTCCTAGAGAAG CCTTGGACTTGAGAGGCAAAATGTTAAAAGAAGGGATTTCTCCTTCTATTATTACTTATTCATCCTTGATTAATGGTTTTTGTAAGCAAAGTGATGTGGA AGAAGCTATGAAGCTTTTAAATGAGATGAAAGCATCAAATGTGGACCAAACTATAGCCACATTCTCCAAGTTAGTTGAGGGTTGTATTCAACATGGAGAT GTTAAGAAGATGTCCAAGCTTCACAATATGATGCATATGGCATGTCCCTCCGCTGGCATTACTTCTCATAAACAAATGGAGTTATCAGAGCTCTCAAACG CCAAAGAAACGCTAGATTCATATACCATCTCTGAAGCTGCATGTTGA
AA sequence Show only first row Show all	>Potri.014G040200.1 pacid=42763392 polypeptide=Potri.014G040200.1.p locus=Potri.014G040200 ID=Potri.014G040200.1.v4.1 annot-version=v4.1 MLRHSPIPSPSPLLSSLRKSIHWKPRHESNLSRPELHERISRLLILRRFDALENLNFHFSDSLVDSILVKLKLNPEACLNFFQLAAKQPNFTPSVKSYCK LVHILSRARMYDETRSYLNELASLCKNNYTSFLVLDELVRVYKDFKFSPLVFDMILKVYAEKGMVKNALHVFDNMGKYGRKPSLRSCNSLLSNLVKRGES YSAVLVYDQMRRLDIVPDVFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLKFMSEKGVMRNKVTLTLLIKGYC KQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCT LVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDILARGINKSI YAFNTMINGLCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLLAEMDTRG LSPNVVTYGALIAGWCDQGRLDKAFSAYFEMIGKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVDFDLVLDHRCLEDFQNADIRKLDCWKIADTLDE SAIKFSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRAR RLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLKEGISPSIITYSSLINGFCKQSDVEEAMKLLNEMKASNVDQTIATFSKLVEGCIQHGD VKKMSKLHNMMHMACPSAGITSHKQMELSELSNAKETLDSYTISEAAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19290			Pentatricopeptide repeat (PPR)...		Potri.014G040200 [exp]	0	1
AT4G33495		RPD1	ROOT PRIMORDIUM DEFECTIVE 1, U...		Potri.015G141700 [exp]	1.00	0.9054
AT2G15980			Tetratricopeptide repeat (TPR)...		Potri.009G110400 [exp]	3.74	0.8756
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Potri.015G089000 [exp]	4.24	0.8676
AT4G30990			ARM repeat superfamily protein...		Potri.001G318800 [exp]	4.69	0.9052
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.013G129500 [exp]	7.14	0.8986
AT3G50370			unknown protein		Potri.005G137700 [exp]	7.74	0.8955
AT4G03090			sequence-specific DNA binding;...		Potri.014G135700 [exp]	12.32	0.8431
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Potri.005G107600 [exp]	13.41	0.8816	Pt-RPB1.1
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.012G144400 [exp]	13.56	0.8804
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.008G003600 [exp]	14.49	0.8807

Compare expression of checked genes

Potri.014G040200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.