Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19300 489 / 1e-174 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G50760 462 / 4e-164 GATL2 galacturonosyltransferase-like 2 (.1) AT1G13250 382 / 2e-132 GATL3 galacturonosyltransferase-like 3 (.1) AT3G28340 378 / 2e-130 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT4G02130 372 / 1e-128 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT3G06260 370 / 1e-127 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT3G62660 370 / 2e-127 GATL7 galacturonosyltransferase-like 7 (.1) AT1G24170 370 / 3e-127 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G70090 366 / 1e-125 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT1G02720 360 / 2e-123 GATL5 galacturonosyltransferase 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G132900 [exp] 606 / 0 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.007G031700 [exp] 492 / 1e-175 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.005G128000 [exp] 492 / 1e-175 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1) Potri.008G116900 [exp] 384 / 2e-133 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.010G129400 [exp] 382 / 2e-132 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.010G038300 [exp] 379 / 1e-130 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.002G200200 [exp] 371 / 6e-128 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.008G192600 [exp] 370 / 2e-127 AT1G70090 556 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.008G018100 [exp] 365 / 7e-126 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018801 [exp] 534 / 0 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10032728 [exp] 534 / 0 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10016301 [exp] 534 / 0 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10041489 [exp] 390 / 1e-135 AT1G13250 491 / 2e-175 galacturonosyltransferase-like 3 (.1) Lus10034274 [exp] 387 / 4e-134 AT1G13250 489 / 9e-175 galacturonosyltransferase-like 3 (.1) Lus10029215 [exp] 374 / 9e-129 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10034012 [exp] 370 / 7e-128 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10012765 [exp] 370 / 1e-127 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10010727 [exp] 369 / 8e-127 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10002440 [exp] 370 / 2e-126 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.014G040300.1 pacid=42764024 polypeptide=Potri.014G040300.1.p locus=Potri.014G040300 ID=Potri.014G040300.1.v4.1 annot-version=v4.1 ATGCTCATGCCTAGACTGATCCGCAAGCTCGCACTACTCTTCACCTTACTCTTCCTTTTTCTCTCCTTAACCACCAATGCCGCCGCCACCACTACCATCA CTCAACAATTCAAAGAAGCCCCTCAATTTTACAACTCTCCTGAGTGCCCTTCAATTGATCAGGATGAAATAGACTCCGAAGCAGAACCAGATGGTGATAA CACCATCTTCTGCTCCGAGCACGCAGTCCATGTGGCAATGACATTAGACGCAGCCTACATCCGTGGATCCATGGCTGCAATTCTCTCGGTTTTGCAACAC ACTTCGTGTCCCCAAAACATAGCTTTCCATTTCGTCGCCTCCGCCTCCGCTAACGCTTCACTCTTACGCGCCACCATCTCATCCTCCTTCCCTTACCTCA AATTCAGGGTCTACACTTTCGACGATTCATCAGTGTCGGGACTCATCTCCACATCAATCCGTTCAGCTCTGGATTGCCCTCTGAATTACGCTCGGAGCTA CCTAGCCAATATCCTACCTCTCTGCGTCCGACGAGTTGTATACCTTGACTCGGACCTGGTTCTTGTCGATGACATTGCCAAACTAGCGGCTACTCCACTT GGTGAAAAATCTGTTCTTGCAGCACCCGAATACTGCAATGCAAATTTTACATCGTATTTCACTCCAACTTTCTGGTCCAATCCTTCTCTATCGCTAACAT TTGCGGATAGAAGACCTTGTTACTTCAATACTGGTGTTATGGTAATAGATCTTGATCGATGGAGAGAAGGAGATTACACGACAAAGATTGAGGAGTGGAT GGAACTACAGAAGAGAATGAGAATTTACGAGTTGGGTTCATTGCCACCATTCCTGCTAGTTTTTGCAGGCGATATAGTGCCAGTTGATCATAAGTGGAAT CAACATGGACTTGGTGGGGATAATTTCAGAGGGCTCTGTAGAGATTTGCATCCTGGTCCTGTTAGTCTCTTGCATTGGAGTGGTAAAGGGAAGCCATGGG CTAGACTTGACGCGAATCGGCCATGTCCTTTGGATGCTCTTTGGGCTCCTTATGATCTCTTGCAGACTCCATTCGCCTTGGATTCTTAA
AA sequence Show only first row Show all	>Potri.014G040300.1 pacid=42764024 polypeptide=Potri.014G040300.1.p locus=Potri.014G040300 ID=Potri.014G040300.1.v4.1 annot-version=v4.1 MLMPRLIRKLALLFTLLFLFLSLTTNAAATTTITQQFKEAPQFYNSPECPSIDQDEIDSEAEPDGDNTIFCSEHAVHVAMTLDAAYIRGSMAAILSVLQH TSCPQNIAFHFVASASANASLLRATISSSFPYLKFRVYTFDDSSVSGLISTSIRSALDCPLNYARSYLANILPLCVRRVVYLDSDLVLVDDIAKLAATPL GEKSVLAAPEYCNANFTSYFTPTFWSNPSLSLTFADRRPCYFNTGVMVIDLDRWREGDYTTKIEEWMELQKRMRIYELGSLPPFLLVFAGDIVPVDHKWN QHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCPLDALWAPYDLLQTPFALDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Potri.014G040300 [exp]	0	1
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.005G141300 [exp]	4.12	0.9320
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.015G060100 [exp]	5.19	0.9159
AT4G29680			Alkaline-phosphatase-like fami...		Potri.006G150900 [exp]	5.56	0.8839
AT2G41770			Protein of unknown function (D...		Potri.016G055700 [exp]	6.32	0.9073
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.001G352300 [exp]	8.00	0.9188
AT2G20650			RING/U-box superfamily protein...		Potri.017G012600 [exp]	9.48	0.9143
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Potri.005G141500 [exp]	11.61	0.9155
AT2G47360			unknown protein		Potri.014G119900 [exp]	11.83	0.9156
AT2G43160			ENTH/VHS family protein (.1.2....		Potri.002G231100 [exp]	14.83	0.8444
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Potri.015G135500 [exp]	15.49	0.8813

Compare expression of checked genes

Potri.014G040300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.