Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36830 322 / 2e-110 HOS3-1 GNS1/SUR4 membrane protein family (.1) AT1G75000 311 / 2e-106 GNS1/SUR4 membrane protein family (.1) AT3G06470 125 / 4e-34 GNS1/SUR4 membrane protein family (.1) AT3G06460 110 / 5e-28 GNS1/SUR4 membrane protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G031500 [exp] 343 / 5e-119 AT4G36830 368 / 6e-129 GNS1/SUR4 membrane protein family (.1) Potri.003G019700 [exp] 134 / 2e-37 AT3G06470 315 / 2e-108 GNS1/SUR4 membrane protein family (.1) Potri.003G019800 [exp] 99 / 8e-24 AT3G06470 280 / 2e-94 GNS1/SUR4 membrane protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022493 [exp] 322 / 3e-110 AT4G36830 374 / 7e-131 GNS1/SUR4 membrane protein family (.1) Lus10016797 [exp] 246 / 1e-81 AT4G36830 296 / 2e-101 GNS1/SUR4 membrane protein family (.1) Lus10018796 [exp] 162 / 2e-49 AT4G36830 172 / 7e-54 GNS1/SUR4 membrane protein family (.1) Lus10018795 [exp] 147 / 3e-44 AT4G36830 157 / 1e-48 GNS1/SUR4 membrane protein family (.1) Lus10030547 [exp] 90 / 8e-21 AT3G06470 330 / 1e-114 GNS1/SUR4 membrane protein family (.1) Lus10012894 [exp] 71 / 4e-14 AT3G06470 298 / 5e-102 GNS1/SUR4 membrane protein family (.1) Lus10012685 [exp] 66 / 8e-12 AT3G06470 259 / 3e-84 GNS1/SUR4 membrane protein family (.1) Lus10020825 [exp] 66 / 9e-12 AT3G06460 260 / 5e-85 GNS1/SUR4 membrane protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01151 [poplar] [flax] ELO GNS1/SUR4 family
Representative CDS sequence Show only first row Show all	>Potri.014G040500.1 pacid=42763805 polypeptide=Potri.014G040500.1.p locus=Potri.014G040500 ID=Potri.014G040500.1.v4.1 annot-version=v4.1 ATGAGACTATCTATAATACAGAGCACCAAATATTGGCTATCAGAGCACCCATCGATTGTTAACTTCCGATGGAGCCCAACCGAATCATGGGGTTCCACGT GGTCTTTTCTCTTCTCCGCCATCACCATCTACCTCATTTCTGCCGTCATCCTCCACCTTGTGGTCTCCTTAATTCTCCGCACTAACCGCCGTGTCCCACT CGGCCCAATCCCAGCAATACACAGCCTGGCAGTGGCGATGGCATCGGTTGTGATTTTTGTTGGCACTCTTCTTTCAACCGCTGCTGAGATTCGTGACACG CGCTGGTTCTGGCGGCGCACCAAGACCACCACGGCTTTCCAGTGGCTCCTCTGTTTCCCTCTCGGCACCCGACCCTCTGGCCGCGTCTTCTTCTGGTCCT ACATTTTCTACCTCTCTCGATTCCTTCATTTATTACGTACTTTTTTAACAGTCCTCGAACACCGTAAACTCACTTTCTTCACCTTGTTCAATCAATCCAT ACTTTTGTTCATGTCATTTCTTTGGCTTGAATTTTCTCAGTCTTTTCAAGTCTTGGCTATCCTTTTAACAACGTTGTTGTACTCTGTCGTTTATGGGTAC CGGTTTTGGACAGCAATTGGGCTTCCAAGTGCTTGTTTCCCTTTTGTAGTGAGTTGTCAGGTTGTGTTGTTGGGTTGCAATTTGGTTTGCCATTTTGGGG TGCTTTCGTTGCATATATTGAAAGGAGGGTGCAATGGAATTGGAGCTTGGGGGTTTAATTCTATGCTGAATGCTATGATTTTGTTGTTGTTTTTGAAGTT TTATCTGAAGATGTATTCGAACAAGAGAAAGGGCGATTCCTTGAGTGAACTTAAGGGTTCTTCAAGGCATTTGCATTCTAGCTTGGAGAAGCTGGACAGT AAGGGTAGTTGA
AA sequence Show only first row Show all	>Potri.014G040500.1 pacid=42763805 polypeptide=Potri.014G040500.1.p locus=Potri.014G040500 ID=Potri.014G040500.1.v4.1 annot-version=v4.1 MRLSIIQSTKYWLSEHPSIVNFRWSPTESWGSTWSFLFSAITIYLISAVILHLVVSLILRTNRRVPLGPIPAIHSLAVAMASVVIFVGTLLSTAAEIRDT RWFWRRTKTTTAFQWLLCFPLGTRPSGRVFFWSYIFYLSRFLHLLRTFLTVLEHRKLTFFTLFNQSILLFMSFLWLEFSQSFQVLAILLTTLLYSVVYGY RFWTAIGLPSACFPFVVSCQVVLLGCNLVCHFGVLSLHILKGGCNGIGAWGFNSMLNAMILLLFLKFYLKMYSNKRKGDSLSELKGSSRHLHSSLEKLDS KGS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Potri.014G040500 [exp]	0	1
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G015300 [exp]	2.82	0.8012	Pt-LOX2.4
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048800 [exp]	4.89	0.7847
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Potri.014G103700 [exp]	10.24	0.7391
AT2G35950		EDA12	embryo sac development arrest ...		Potri.006G203800 [exp]	14.69	0.8130
AT1G29720			Leucine-rich repeat transmembr...		Potri.011G072941 [exp]	20.92	0.7419
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.017G010300 [exp]	28.56	0.7349
AT5G66590			CAP (Cysteine-rich secretory p...		Potri.005G130100 [exp]	30.98	0.7006
AT5G18290		SIP1B, SIP1;2	SMALL AND BASIC INTRINSIC PROT...		Potri.002G227500 [exp]	68.19	0.6760
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074800 [exp]	68.58	0.6813
AT5G55690	MADS		MADS-box transcription factor ...		Potri.012G109900 [exp]	88.23	0.6637

Compare expression of checked genes

Potri.014G040500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.