Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75020 486 / 8e-173 LPAT4 lysophosphatidyl acyltransferase 4 (.1.2) AT3G18850 421 / 9e-147 LPAT5 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5) AT3G57650 166 / 2e-47 LPAT2 lysophosphatidyl acyltransferase 2 (.1) AT1G51260 141 / 2e-38 LPAT3 lysophosphatidyl acyltransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G133100 [exp] 629 / 0 AT1G75020 536 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2) Potri.T125204 [exp] 448 / 8e-158 AT3G18850 493 / 9e-176 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5) Potri.009G112307 [exp] 448 / 1e-157 AT3G18850 493 / 1e-175 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5) Potri.016G053000 [exp] 163 / 7e-46 AT3G57650 606 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Potri.006G055000 [exp] 161 / 1e-45 AT3G57650 587 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Potri.001G259200 [exp] 142 / 2e-38 AT1G51260 521 / 0.0 lysophosphatidyl acyltransferase 3 (.1) Potri.009G054500 [exp] 139 / 1e-37 AT3G57650 374 / 2e-128 lysophosphatidyl acyltransferase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032727 [exp] 548 / 0 AT1G75020 530 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2) Lus10018803 [exp] 538 / 0 AT1G75020 531 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2) Lus10011298 [exp] 167 / 4e-48 AT3G57650 609 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10040492 [exp] 166 / 2e-47 AT3G57650 610 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10042356 [exp] 164 / 2e-46 AT3G57650 611 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10026312 [exp] 163 / 3e-46 AT3G57650 615 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10002556 [exp] 135 / 1e-35 AT1G51260 496 / 8e-176 lysophosphatidyl acyltransferase 3 (.1) Lus10027375 [exp] 130 / 7e-34 AT1G51260 495 / 1e-175 lysophosphatidyl acyltransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF01553 [poplar] [flax] Acyltransferase Acyltransferase CL0228 [poplar] [flax] PF16076 [poplar] [flax] Acyltransf_C Acyltransferase C-terminus
Representative CDS sequence Show only first row Show all	>Potri.014G040600.1 pacid=42764460 polypeptide=Potri.014G040600.1.p locus=Potri.014G040600 ID=Potri.014G040600.1.v4.1 annot-version=v4.1 ATGGCATTGGAGGAGGTGGTTGCTATTGAATCTGGAAAGGAGATGGAAGAAACTTTCAAGCCTCTCAAATCCGATGATAGACTAAAGCATTACCCTTTAA CTCCTTATAGGTTGATAAGGGGTCTTATATGTTTGTTGGTGTATCTTTCTACTGCTTTTATGTTTGTAGTGTATTTTGCACCTGTTGCAGCTGTCTTGAT GCGATTTTTCAGCATACACTATTGTAGAAAAGCAACATCCTTCCTCTTTGCTCTTTGGCTAGCTTTGTGGCCCTTTCTATTTGAAAAGATAAATGGGACC AAAGTTGTATTTTCTGGAGACTTAGTTCCGCCTAAGGAACGTGTTTTGATAATTGCTAATCACAGAACTGAGGTTGATTGGATGTACTTGTGGAACTTAG CATTGCGTAAGGGGTGCCTGGGCTACATCAAGTATATCCTCAAGAGCAGCTTGATGAAACTACCTGTCTTTGGGTGGGGATTCCATATTTTGGAGTTCAT TTCAGTTGAGAGGAAGTGGGAAGTTGATGAACCTGCCATGCGTGAAATGCTTTCGACTTTCAAGGATTCTCGAGATCCCTTGTGGCTAGCACTTTTCCCC GAAGGAACTGATTTTAGTGAAGAGAAATGCCAGAAGAGCCAAAGGTTTGCCAGTGAAGTTGGACTTCCTGTGCTGGCAAATGTTCTACTTCCTAAAACAA GGGGTTTTGGCGTATGCTTGGAAGTTCTACAGAATTCCTTGGATGCAGTTTATGATGTCAGTATCGCATATAAGGACCAATTGCCTACCTTTCTGGACAA CGTATTCGGGACAGATCCTTCAGAAGTTCACATTCATGTCCAGCGTATCCCTGTTAAGGATATCCCAGCTTCTAATGCCGAGGCTGCTAAATGGTTAATG GATAGGTTCCAGCTCAAAGATCAGTTGCTTTTAGACTTCAAAGCTCGAGGCCATTTCCCTAATGAAGGAACTGAACAAGAACTTTCTACACTGAAATGCT TGGTAAATTTCACTGTGGTAATTTTATTGACTGCATTGTTCATTTATCTTACATTTTTTTCATCCGTTTGGTTCAAAACATATGCGAGTTTAGCATGTGC CTACCTTGCTTCAGCTACTCACTTTAAATTCCGGCCATTACCCATTACGAATTTGATATAG
AA sequence Show only first row Show all	>Potri.014G040600.1 pacid=42764460 polypeptide=Potri.014G040600.1.p locus=Potri.014G040600 ID=Potri.014G040600.1.v4.1 annot-version=v4.1 MALEEVVAIESGKEMEETFKPLKSDDRLKHYPLTPYRLIRGLICLLVYLSTAFMFVVYFAPVAAVLMRFFSIHYCRKATSFLFALWLALWPFLFEKINGT KVVFSGDLVPPKERVLIIANHRTEVDWMYLWNLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVERKWEVDEPAMREMLSTFKDSRDPLWLALFP EGTDFSEEKCQKSQRFASEVGLPVLANVLLPKTRGFGVCLEVLQNSLDAVYDVSIAYKDQLPTFLDNVFGTDPSEVHIHVQRIPVKDIPASNAEAAKWLM DRFQLKDQLLLDFKARGHFPNEGTEQELSTLKCLVNFTVVILLTALFIYLTFFSSVWFKTYASLACAYLASATHFKFRPLPITNLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Potri.014G040600 [exp]	0	1
AT3G52105			unknown protein		Potri.006G054200 [exp]	6.63	0.9084
AT3G02420			unknown protein		Potri.004G104900 [exp]	10.39	0.8572
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Potri.002G012000 [exp]	23.40	0.8979	FTSH2.2
AT1G68140			Protein of unknown function (D...		Potri.001G208800 [exp]	33.04	0.8791
AT5G38260			Protein kinase superfamily pro...		Potri.017G034500 [exp]	33.31	0.8880
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Potri.015G147600 [exp]	34.20	0.8863
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Potri.007G044300 [exp]	34.42	0.8888	Pt-ZEAEPOX.1
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.017G151800 [exp]	36.48	0.8863
AT5G65520			Tetratricopeptide repeat (TPR)...		Potri.002G111300 [exp]	40.00	0.8777
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.009G154100 [exp]	46.17	0.8856

Compare expression of checked genes

Potri.014G040600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.