Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42620 1353 / 0 metalloendopeptidases;zinc ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G133300 [exp] 1595 / 0 AT5G42620 1397 / 0.0 metalloendopeptidases;zinc ion binding (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016304 [exp] 1361 / 0 AT5G42620 1299 / 0.0 metalloendopeptidases;zinc ion binding (.1.2) Lus10010792 [exp] 292 / 3e-92 AT5G42620 312 / 9e-101 metalloendopeptidases;zinc ion binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF01457 [poplar] [flax] Peptidase_M8 Leishmanolysin CL0001 [poplar] [flax] EGF PF07974 [poplar] [flax] EGF_2 EGF-like domain
Representative CDS sequence Show only first row Show all	>Potri.014G040800.3 pacid=42763528 polypeptide=Potri.014G040800.3.p locus=Potri.014G040800 ID=Potri.014G040800.3.v4.1 annot-version=v4.1 ATGGAGGGTTTTATAAACAAGTTTAGTTCATGTTCGGTGACTAGAGTTGACACCAAGTTCAGATTCACACTCATTGTTTTCGAGATTGCGTTGATATTGT TATGCTTTCAAGCTATAAATGCTGAAAGTCATGGCCAGCAATTGCAAGGGCAAAGTGCAGAAAGGGGAAGTGAAAATATTGTATCACATTCATGCATTCA TGACCAGATAATTGAAGAGAGGAAACGACCTGGTCGCCAGGTGTACTCTGTTACGCCCCAGGTTTATGGTCAGTCCGGTAACTCTAAACCCCTTAATGGC AAAGGTAGGGCCTTGCTTGGAATCTCAGAATCATCGTTACAGCAAAAAGGTGCAAAGAAACCAATTAGGATATTTTTGAATTATGACGCTGTTGGTCACT CTCCTGATAGAGATTGTCGGAAAGTTGGTGATATTGTGAAGCTTGGGGAGCCTCCAGTGGCTTCTCTTCCTGGCACTCCTTGCAATCCCCATGGTGATCC TCCAATTTATGGTGATTGCTGGTACAATTGCACTGTTGATGATATTTCCGGGGAGGACAAAAGGCATCGTCTTCGCAAGGCTCTAGGGCAGACAGCTGAT TGGTTTAGGGGAGCATTGGCTGTTGAGCCTGTCAAGGGTAACTTGCGGTTGAGTGGATATTCTGCATGTGGGCAAGATGGAGGTGTACAACTTCCACATG GATATGTTGAAGAGGGTGTTGCTGATGCGGACTTGGTTCTATTGGTGACTACAAGACCTACCACCGGCAACACTCTTGCATGGGCAGTGGCATGTGAACG TGATCAATGGGGTCGTGCAATTGCTGGACATGTGAATGTTGCCCCTCGCCATTTGACAGCTGAAGCAGAGACTTTACTTTCTGCTACCCTCATTCATGAG GTGATGCATGTCCTTGGTTTTGATCCTCATGCCTTTGCCCATTTCAGGGATGACAGAAAGAGAAGGCGCAGTAAGGTCACTGAACAACTCATGGATGAAA AGCTTGGCCGGATGGTAACACGTGTAGTTCTTCCCCGTGTTGTCATGCACTCACGACATCATTATGGGGCATTCTCTGAAAATTTTACAGGTTTAGAGCT TGAAGATGGGGGAGGACGTGGCACATCAGGGTCACATTGGGAAAAGAGGCTTCTGATGAACGAGATAATGACAGGATCCGTGGATACAAGATCGGTAGTT TCAAAAATGACACTAGCTCTATTGGAGGATAGTGGTTGGTACCGAGCTAACTATAGCATGGCAGATCATCTTGATTGGGGTCGAAATCAAGGAACTGATT TTCTTACTTCCCCTTGCAACCTCTGGAAGGGGGCATATCATTGCAACACTACCCAGTTGTCAGGCTGTACATACAACAGGGAGGCAGAAGGTTATTGCCC AATTGTAAGTTACAGTGGAGATCTCCCCCAGTGGGCTCGCTACTTCCCGCAGGCAAATAAAGGCGGGCAGTCCTCACTGGCCGACTACTGTACTTATTTT GTGGCATACTCCGATGGATCCTGTACAGACTCTAACAGTGCAAGAGAGCCAGATAGAATGTTAGGTGAAGTGCGAGGAAGTAGGTCCAGGTGTATGACCT CATCATTAGTACGTTCTGGGTTTGTCCGGGGCTCAGTGACCCAAGGAAATGGTTGTTATCAGCACAGATGTGTCAATAACTCTCTTGAGGTTGCTGTGGA TGGTATTTGGAAAGCGTGTCCAGAAGCTGGAGGACCAGTTCAATTCCCTGGATTTAACGGGGAGCTGATTTGTCCTGCTTACCATGAGCTCTGCAGCACA GGTTCCATTTCTGTACCTGGACAGTGCCCCAGTTCTTGTGATTTTAATGGAGACTGTGTAGATGGAAAGTGTCACTGTTTTGTAGGGTTTCATGGTCATG ATTGTAGTAAACGCTCCTGTCCAGGGAATTGCAATGGCCAGGGCAAGTGCCTTTCAAATGGGATCTGTCAATGTGAAAATGGTTACACTGGCATTGACTG CTCTACTGCTGTTTGTGATGAACAATGCAGCCTACATGGTGGGGTCTGTGACAACGGAGTTTGTGAATTCCGTTGCTCAGACTATGCAGGCTACACATGT CTGAACAGCTCAACTCTGCTGTCCAGTCTTTCAGTTTGCAAAAATGTACTGGGGAGTGACAGCCAACACTGTGCACCCAGTGAATCAAGCATACTTCAGC AGCTAGAAGAAGTTGTTGTCATGCCCAACTATCACCGATTGTTCCCAGGTGGTGCTCGGAAATTATTTAATATCTTTGGCAGCAATTACTGTGATGCAGC TGCCAAGCGACTAGCCTGCTGGATCTCTATCCAAAAGTGTGACATGGATGGTGACAACAGGCTCCGGGTATGTCATTCAGCATGTCAGTCCTATAATTTA GCTTGTGGAGCATCACTTGACTGCTCGGACCAAACCCTCTTTAGCAGTGAGGGGGAAGGGGAGGGTCAGTGCACGGGCTCTGGTGAGATGAAAGTATCAT GGTTTAGTCGTCTGCGGAGTAGTTTGTTTTCAAGGCTCAATTGTAGGAAAGGTGGCACGAAGAGCACGTGCCCTGGATGTAGGTTTGGTCTTGTGCTTCA CCCTCGTTTAAAGAAATTGGGTGGCATTGGCATTGGCATTGGCTTTCGAAAATGA
AA sequence Show only first row Show all	>Potri.014G040800.3 pacid=42763528 polypeptide=Potri.014G040800.3.p locus=Potri.014G040800 ID=Potri.014G040800.3.v4.1 annot-version=v4.1 MEGFINKFSSCSVTRVDTKFRFTLIVFEIALILLCFQAINAESHGQQLQGQSAERGSENIVSHSCIHDQIIEERKRPGRQVYSVTPQVYGQSGNSKPLNG KGRALLGISESSLQQKGAKKPIRIFLNYDAVGHSPDRDCRKVGDIVKLGEPPVASLPGTPCNPHGDPPIYGDCWYNCTVDDISGEDKRHRLRKALGQTAD WFRGALAVEPVKGNLRLSGYSACGQDGGVQLPHGYVEEGVADADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHE VMHVLGFDPHAFAHFRDDRKRRRSKVTEQLMDEKLGRMVTRVVLPRVVMHSRHHYGAFSENFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVV SKMTLALLEDSGWYRANYSMADHLDWGRNQGTDFLTSPCNLWKGAYHCNTTQLSGCTYNREAEGYCPIVSYSGDLPQWARYFPQANKGGQSSLADYCTYF VAYSDGSCTDSNSAREPDRMLGEVRGSRSRCMTSSLVRSGFVRGSVTQGNGCYQHRCVNNSLEVAVDGIWKACPEAGGPVQFPGFNGELICPAYHELCST GSISVPGQCPSSCDFNGDCVDGKCHCFVGFHGHDCSKRSCPGNCNGQGKCLSNGICQCENGYTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCSDYAGYTC LNSSTLLSSLSVCKNVLGSDSQHCAPSESSILQQLEEVVVMPNYHRLFPGGARKLFNIFGSNYCDAAAKRLACWISIQKCDMDGDNRLRVCHSACQSYNL ACGASLDCSDQTLFSSEGEGEGQCTGSGEMKVSWFSRLRSSLFSRLNCRKGGTKSTCPGCRFGLVLHPRLKKLGGIGIGIGFRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42620			metalloendopeptidases;zinc ion...		Potri.014G040800 [exp]	0	1
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Potri.018G029400 [exp]	3.46	0.7139	Pt-CESA1.2
AT4G01210			glycosyl transferase family 1 ...		Potri.002G166100 [exp]	4.58	0.7393
AT4G21890			unknown protein		Potri.011G001800 [exp]	8.00	0.7172
AT5G04620		BIO4, ATBIOF	biotin 4, biotin F (.1.2)		Potri.001G126700 [exp]	8.48	0.7079
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Potri.011G117700 [exp]	10.39	0.6856	CYP72D2-1
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Potri.014G135540 [exp]	17.60	0.6488
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Potri.001G279900 [exp]	21.93	0.6766
AT4G32140			EamA-like transporter family (...		Potri.006G257000 [exp]	22.22	0.6454
AT4G23740			Leucine-rich repeat protein ki...		Potri.012G033200 [exp]	22.44	0.6553
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Potri.003G001000 [exp]	26.32	0.6950	Pt-ARF1.11

Compare expression of checked genes

Potri.014G040800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.