Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65910 75 / 3e-14 NAC ANAC028 NAC domain containing protein 28 (.1) AT2G43000 69 / 6e-13 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1) AT5G39610 68 / 1e-12 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1) AT4G36160 68 / 3e-12 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT1G62700 67 / 5e-12 NAC ANAC026, VND5 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1) AT2G33480 66 / 6e-12 NAC ANAC041 NAC domain containing protein 41 (.1.2) AT1G77450 66 / 7e-12 NAC ANAC032 NAC domain containing protein 32 (.1) AT4G10350 66 / 7e-12 NAC BRN2, NST4, ANAC070 BEARSKIN 2, NAC domain containing protein 70 (.1) AT3G12977 66 / 8e-12 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G62380 66 / 9e-12 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G166200 [exp] 75 / 6e-15 AT1G69490 305 / 1e-104 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.003G089800 [exp] 74 / 2e-14 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.001G144400 [exp] 69 / 1e-12 AT4G17980 318 / 2e-108 NAC domain containing protein 71 (.1) Potri.009G052300 [exp] 69 / 1e-12 AT1G01720 179 / 2e-53 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.012G126500 [exp] 69 / 1e-12 AT1G12260 348 / 3e-118 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.001G120000 [exp] 68 / 3e-12 AT1G12260 455 / 1e-160 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.014G104800 [exp] 68 / 3e-12 AT2G46770 380 / 3e-131 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.008G089000 [exp] 67 / 3e-12 AT1G69490 331 / 6e-115 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.015G127400 [exp] 67 / 4e-12 AT1G12260 378 / 4e-130 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032724 [exp] 233 / 1e-72 AT5G04410 66 / 4e-12 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10018810 [exp] 230 / 1e-71 AT5G04410 64 / 3e-11 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10036773 [exp] 76 / 5e-15 AT1G69490 318 / 1e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10037156 [exp] 75 / 1e-14 AT1G69490 318 / 2e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10030446 [exp] 72 / 7e-14 AT1G69490 302 / 2e-103 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10026617 [exp] 72 / 1e-13 AT1G69490 298 / 1e-101 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10001809 [exp] 70 / 2e-13 AT5G13180 271 / 6e-92 VND-interacting 2, NAC domain containing protein 83 (.1) Lus10024601 [exp] 71 / 3e-13 AT1G12260 436 / 3e-152 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10002581 [exp] 69 / 3e-13 AT5G13180 273 / 6e-93 VND-interacting 2, NAC domain containing protein 83 (.1) Lus10007410 [exp] 70 / 6e-13 AT3G15510 241 / 1e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.014G041300.3 pacid=42764573 polypeptide=Potri.014G041300.3.p locus=Potri.014G041300 ID=Potri.014G041300.3.v4.1 annot-version=v4.1 ATGCTCTTGCAAGCAATTCCAGCTACTACAAAAGGTGCAGAGAGATATTTTGATCCCCGTGCTGTTTGCTTCCCTTTGGATTCAGCCACTATGTGCCCTC CAGCTTCTTCTCCAGTTGCAGATATTGATTTTCATTGTAGAGATGAGGAGCTCTTTATGTTTTTGTATAAACTTACTAGTGGATCCCCTCTCCCAGGAAA TGTGATTACTGATGTCAATCCTTACATCTATGCACCATCAAATCTACCAGAAGACATTTGGTACTTGCTTCGCGTCAAGGAGAATGATGATACAGGACTT GGATTCTGGAAGGTCAAAGGGGAGGCCTGTAAGCTGTTCTCGAATTCTGCCATCACTGGCTGGAGAACCACCTTCGAGTTTTTTGAAGGCCAAGTGCCTC ATGAGCGTAAAACTGACTGGTTGATGCAGGAATACTGGATAACTCAGAAGGAACATATTGAAAAAAGAAAGGCCAAGGAAGCCAGATCACTATGCAGAGT ATTTCTGGGTGGTGAACAAGCTCTAGACCATGAAAATCAACTGATTGCTAGCCCCCACAGTGATACCCACATTGACCTTACACAATCAATTGGTCCAGGG ACTCTTGCTGATACAAGCCATGGTTCCTCAAGCAATCCTGAGGTGAACAAGGATGATGAAACTGAAAACATGGTTGCAACAGGAAGACCACCAAATCTCC CGGTCGCAAATCTGCCTGAAATTGATTGTTTTTCCAGAGGTGACTACCTGGAACTGCTGGATCTTGATAATCCAGCTTCACGTTCTTCTAGTTCAGATAA TTCGAGTTGCATGACCATGTCATCGGATGAATACTTTGACTCAATCGCTTTGTTGCGAGACCTAGAATCTGAAAGTAATCAGGCCCTGGCACAAAAGGAT AAGGACTGCAAGCTTAGTGTCGCTGCATCTCTCAGACCAGATGAGGTGGTTGTGCTTCCAGCTTCTCATGGATCATATATCAGCAATGAAGGAGGCAAGC CACATGCTGTTGAAACTGATTCGTCCATCAATGGAAATGGTCATAGAGATTTAGATATTCAACAAGCAGTCAGAAATCAAGGTGCAAATCACTGGGGTGA GGGTCCATCATCAAATTTTCATGCTGTAGGTGCATCATCAGGTGGCCATGTTGCATCTCCAGATGAAGAGGAGAAGGCTGCTAGACGCAGAAGGAAAAAG TCCAAGAAGAAGTATCTGTGCTTCGTTCCATTTTACTTCTTCTTCTGA
AA sequence Show only first row Show all	>Potri.014G041300.3 pacid=42764573 polypeptide=Potri.014G041300.3.p locus=Potri.014G041300 ID=Potri.014G041300.3.v4.1 annot-version=v4.1 MLLQAIPATTKGAERYFDPRAVCFPLDSATMCPPASSPVADIDFHCRDEELFMFLYKLTSGSPLPGNVITDVNPYIYAPSNLPEDIWYLLRVKENDDTGL GFWKVKGEACKLFSNSAITGWRTTFEFFEGQVPHERKTDWLMQEYWITQKEHIEKRKAKEARSLCRVFLGGEQALDHENQLIASPHSDTHIDLTQSIGPG TLADTSHGSSSNPEVNKDDETENMVATGRPPNLPVANLPEIDCFSRGDYLELLDLDNPASRSSSSDNSSCMTMSSDEYFDSIALLRDLESESNQALAQKD KDCKLSVAASLRPDEVVVLPASHGSYISNEGGKPHAVETDSSINGNGHRDLDIQQAVRNQGANHWGEGPSSNFHAVGASSGGHVASPDEEEKAARRRRKK SKKKYLCFVPFYFFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.014G041300 [exp]	0	1
AT2G43320			S-adenosyl-L-methionine-depend...		Potri.017G031700 [exp]	4.24	0.8521
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Potri.004G071100 [exp]	4.47	0.8123
AT3G07870			F-box and associated interacti...		Potri.002G223000 [exp]	5.74	0.8338
AT5G45190			Cyclin family protein (.1.2)		Potri.002G032300 [exp]	6.00	0.8120
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Potri.011G149300 [exp]	11.13	0.7398
AT5G07910			Leucine-rich repeat (LRR) fami...		Potri.015G048800 [exp]	12.16	0.7600
AT1G49050			Eukaryotic aspartyl protease f...		Potri.015G053300 [exp]	15.87	0.8025
AT5G17550		AtPEX19-2, PEX1...	peroxin 19-2 (.1)		Potri.003G077000 [exp]	20.34	0.7486
AT3G02210		COBL1	COBRA-like protein 1 precursor...		Potri.004G117100 [exp]	22.97	0.7853
AT4G02040			unknown protein		Potri.008G198000 [exp]	23.21	0.7967

Compare expression of checked genes

Potri.014G041300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.