Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19340 438 / 6e-153 Methyltransferase MT-A70 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032722 [exp] 404 / 4e-140 AT1G19340 376 / 4e-129 Methyltransferase MT-A70 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05063 [poplar] [flax] MT-A70 MT-A70
Representative CDS sequence Show only first row Show all	>Potri.014G041400.1 pacid=42763878 polypeptide=Potri.014G041400.1.p locus=Potri.014G041400 ID=Potri.014G041400.1.v4.1 annot-version=v4.1 ATGGAGAACTCGAAAACAAGCGACAAGCTATCTGCCTTTTTAGAATCTGGAATTTACAGATTCGAGAATTCAAATGTTGTTTTTATTGACCCGGTTCGAA TGTTAAACCGGTCCTATACCCGCTTCAGGTCTTCACCATCTGCCTACTATTCTCGTTTCTTCGATTCCAAAGAAACTATTGTAACTTCAGATTCAAAGAA ACGAAAGCGAAAGGAGAAGAAGACACCCCACGACTTAAACGAAAGAGAACAAGCTGCTACTCTGCGTCACCAGCAAGCGAGGCCTATGTTGTTGAAGGCC CATGGATTTTTGATGGAAGCTACTGATCTCTTAGCGATTATGAAGGATTTAAGGGGTGGCAGTAATATCTGTTCTTCAACAGAATTGAGTGAACAACACT CTTTTATTGAGCTTGGAAAGGTCTGGCAAGCTCCTCTCTATGAAATCGTTCTTAAAGGTGCTTGGAAGGGGTTAGAAAGAGTGGTTCCTGTTTTTAACAA TTTGGTTGTTAACGAGACAAGTGATGATATGGAGGCAGAATTTCTAAACAATAAATATATATTGCCAAGAGAGAGTTGCTTCTACATGTCTGATTTGGGG CAGGTTCACAACCTTATTCACGAATGCAATGTTGGCTTCAATCTTATAGTGATCGATCCACCATGGGAAAATGGAAGTGCTCGTCAAAAACTTAGGTACC CAACTCTGCCAAACTGGTATTTCTTATCCCTTCCTATTAAGCAACTTGCTCATCCAGATGGTGCACTTGTAGCCTTGTGGATGACCAACAGAGAGAAATT GCATAATTTTGTTCAGAAAGAGCTATTTCCTTCATGGGGAGTCAGTCACGAAGCTACTTATTACTGGCTGAAGGTGAAAGCAGATGGCTCACTGATTAGT GATTTAGATCTCTTTCATCATAGACCTTATGAATGCCTTCTATTGGGCTATTTTCATGGACAGGGCACAAATTCTAAACAGCCGCCAAGGCTGAGACCTA TAAAACATGATCAAATCATCATAAGCATCCCAGGGGAGTACTCGAGGAAGCCTCCAATTGGAGAGTTGCTGCTGGAGCATGTTCCAGACTTTAAACCTGC TCGATGTATTGAACTATTTGCTAGAGAGATGACAGCTGGATGGACTTCTTGGGGAAATGAACCTCTTCATTTTCAACAGTCGACATCTTTTGTAAGGGAT GAGATCGATGATACATCCTGA
AA sequence Show only first row Show all	>Potri.014G041400.1 pacid=42763878 polypeptide=Potri.014G041400.1.p locus=Potri.014G041400 ID=Potri.014G041400.1.v4.1 annot-version=v4.1 MENSKTSDKLSAFLESGIYRFENSNVVFIDPVRMLNRSYTRFRSSPSAYYSRFFDSKETIVTSDSKKRKRKEKKTPHDLNEREQAATLRHQQARPMLLKA HGFLMEATDLLAIMKDLRGGSNICSSTELSEQHSFIELGKVWQAPLYEIVLKGAWKGLERVVPVFNNLVVNETSDDMEAEFLNNKYILPRESCFYMSDLG QVHNLIHECNVGFNLIVIDPPWENGSARQKLRYPTLPNWYFLSLPIKQLAHPDGALVALWMTNREKLHNFVQKELFPSWGVSHEATYYWLKVKADGSLIS DLDLFHHRPYECLLLGYFHGQGTNSKQPPRLRPIKHDQIIISIPGEYSRKPPIGELLLEHVPDFKPARCIELFAREMTAGWTSWGNEPLHFQQSTSFVRD EIDDTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19340			Methyltransferase MT-A70 famil...		Potri.014G041400 [exp]	0	1
AT5G49530			SIN-like family protein (.1)		Potri.007G028600 [exp]	4.47	0.7456
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Potri.013G048100 [exp]	12.00	0.6903
AT1G15780			unknown protein		Potri.003G014156 [exp]	14.56	0.6463
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.001G160700 [exp]	25.21	0.6239
AT4G34310			alpha/beta-Hydrolases superfam...		Potri.002G128201 [exp]	25.80	0.5883
AT1G63500			Protein kinase protein with te...		Potri.001G104700 [exp]	37.08	0.6413
AT5G15270			RNA-binding KH domain-containi...		Potri.004G100201 [exp]	37.73	0.6356
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Potri.018G086300 [exp]	41.49	0.6384	HBT.2
AT4G04180			P-loop containing nucleoside t...		Potri.004G004000 [exp]	43.16	0.5610
AT3G18310			unknown protein		Potri.012G041300 [exp]	51.35	0.6308

Compare expression of checked genes

Potri.014G041400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.