Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75090 332 / 2e-113 DNA glycosylase superfamily protein (.1) AT5G57970 257 / 7e-84 DNA glycosylase superfamily protein (.1.2) AT1G15970 243 / 2e-78 DNA glycosylase superfamily protein (.1) AT1G80850 241 / 7e-78 DNA glycosylase superfamily protein (.1) AT1G13635 205 / 3e-64 DNA glycosylase superfamily protein (.1.2) AT3G12710 201 / 3e-62 DNA glycosylase superfamily protein (.1) AT5G44680 196 / 7e-60 DNA glycosylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G133800 [exp] 517 / 0 AT1G75090 333 / 7e-114 DNA glycosylase superfamily protein (.1) Potri.018G106900 [exp] 268 / 1e-87 AT5G57970 418 / 2e-146 DNA glycosylase superfamily protein (.1.2) Potri.006G184700 [exp] 268 / 1e-87 AT5G57970 473 / 8e-168 DNA glycosylase superfamily protein (.1.2) Potri.003G182300 [exp] 257 / 6e-84 AT5G57970 286 / 1e-94 DNA glycosylase superfamily protein (.1.2) Potri.010G137300 [exp] 225 / 9e-72 AT1G13635 380 / 7e-133 DNA glycosylase superfamily protein (.1.2) Potri.008G112300 [exp] 219 / 2e-69 AT1G13635 372 / 9e-130 DNA glycosylase superfamily protein (.1.2) Potri.010G175300 [exp] 214 / 1e-66 AT3G12710 372 / 1e-128 DNA glycosylase superfamily protein (.1) Potri.008G081000 [exp] 214 / 2e-66 AT5G44680 390 / 6e-135 DNA glycosylase superfamily protein (.1) Potri.003G156500 [exp] 207 / 9e-64 AT5G44680 370 / 8e-127 DNA glycosylase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002310 [exp] 259 / 1e-84 AT1G80850 299 / 3e-100 DNA glycosylase superfamily protein (.1) Lus10026083 [exp] 257 / 8e-84 AT5G57970 308 / 6e-104 DNA glycosylase superfamily protein (.1.2) Lus10019198 [exp] 190 / 2e-59 AT1G13635 300 / 4e-103 DNA glycosylase superfamily protein (.1.2) Lus10036248 [exp] 176 / 3e-52 AT5G44680 383 / 4e-133 DNA glycosylase superfamily protein (.1) Lus10019199 [exp] 136 / 9e-38 AT1G13635 222 / 2e-71 DNA glycosylase superfamily protein (.1.2) Lus10036835 [exp] 136 / 9e-38 AT1G13635 216 / 2e-69 DNA glycosylase superfamily protein (.1.2) Lus10038388 [exp] 107 / 5e-27 AT5G57970 256 / 6e-84 DNA glycosylase superfamily protein (.1.2) Lus10028119 [exp] 43 / 0.0003 AT1G30130 368 / 2e-121 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03352 [poplar] [flax] Adenine_glyco Methyladenine glycosylase
Representative CDS sequence Show only first row Show all	>Potri.014G041700.1 pacid=42763976 polypeptide=Potri.014G041700.1.p locus=Potri.014G041700 ID=Potri.014G041700.1.v4.1 annot-version=v4.1 ATGTCTGGGGCTACTAAGCTAAGATCGGCTGAAAAACAAATGCAGGAGCCACCACGAGCGATACTTGGTCCGGCAGGAAACAGAGTTAGGGTTTCGGAGG AGGCTAAAAGGAAGATTGAGGTTTTAAAGAAATCACTGCAGAAACCAAAGAAACCTGTGGAGAAAATGTCTCAAGCTGCTGTTAAGAATAACTTGTCAGT GGATAGCACGTGTTCTTCGGATTCTTATTCTTCTTCTTCAAGTTCTGGAAGGAATGTGAAGCGTAATGGAATAAAACAAGTCAAGGATGTTCCTAATGGA GGTGAAATTAAGGATGCCTCGTCGAAGAAAGATGGGCCGGTTAAAAGGTGTGATTGGATTACTCCGAATTCTGACCCACTTTATATGTCTTTCCACGATG AAGAATGGGGAGTTCCAGTTCATGATGACAGGAAGCTGTTTGAGTTACTTGTATTTTCACAAGCATTAGCAGAACTCAGCTGGCTAGCAATTCTTCACAT GAGAGACATATTCAGGAAGCTGTTTGACCAATTTGACCCATCATCCATTGCACAATTTACTGAGAAGAAGCTCCTATCATTGAAAGTTAATGGGAATCTG TTGCTATCTGAACCAAAGCTTCGTGCAATAGTGGAGAATGCTAAACAGATGCTCAAGATTCAGCAGGAATTTGGTTCCTTCAGCAACTATTGCTGGCGGT TTGTGAACCAGAAACCATTAAGAAATGGTTTTCGCTATGGGCGCCAAGTACCTGCAAAGACCCCAAAAGCCGAACTGATTAGCAAGGATCTGATGCAAAG AGGGTTCCGCTGCGTTGGACCCACTGTTGTTTATTCATTCATGCAAGTGGCAGGAATTGCTAATGATCATCTGATATCATGCTTCCGATACCAAGAATGC AATGCAGACGTCGAAAAGGATTTCAAACCCCCCAAGAGTCAAGAGATAGAGATAGTTACTAAAGCTTTGGGGAACACATGCTTTTCTCATAACTAA
AA sequence Show only first row Show all	>Potri.014G041700.1 pacid=42763976 polypeptide=Potri.014G041700.1.p locus=Potri.014G041700 ID=Potri.014G041700.1.v4.1 annot-version=v4.1 MSGATKLRSAEKQMQEPPRAILGPAGNRVRVSEEAKRKIEVLKKSLQKPKKPVEKMSQAAVKNNLSVDSTCSSDSYSSSSSSGRNVKRNGIKQVKDVPNG GEIKDASSKKDGPVKRCDWITPNSDPLYMSFHDEEWGVPVHDDRKLFELLVFSQALAELSWLAILHMRDIFRKLFDQFDPSSIAQFTEKKLLSLKVNGNL LLSEPKLRAIVENAKQMLKIQQEFGSFSNYCWRFVNQKPLRNGFRYGRQVPAKTPKAELISKDLMQRGFRCVGPTVVYSFMQVAGIANDHLISCFRYQEC NADVEKDFKPPKSQEIEIVTKALGNTCFSHN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75090			DNA glycosylase superfamily pr...		Potri.014G041700 [exp]	0	1
AT5G04700			Ankyrin repeat family protein ...		Potri.008G023101 [exp]	6.16	0.9056
AT3G56810			unknown protein		Potri.006G026600 [exp]	9.05	0.9053
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Potri.001G126100 [exp]	10.39	0.9032
AT5G58000			Reticulon family protein (.1)		Potri.018G108200 [exp]	16.58	0.8941
AT5G50840			unknown protein		Potri.010G219700 [exp]	17.32	0.8655
					Potri.006G062150 [exp]	20.19	0.8948
AT2G21870		MGP1	MALE GAMETOPHYTE DEFECTIVE 1, ...		Potri.005G085500 [exp]	20.32	0.8983
AT3G18670			Ankyrin repeat family protein ...		Potri.008G022900 [exp]	23.45	0.8942
AT5G60710			Zinc finger (C3HC4-type RING f...		Potri.016G001300 [exp]	24.24	0.8836
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.007G072750 [exp]	27.16	0.8947

Compare expression of checked genes

Potri.014G041700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.