Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01070 390 / 1e-131 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01420 349 / 7e-116 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT5G26310 347 / 4e-115 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT1G01390 344 / 5e-114 UDP-Glycosyltransferase superfamily protein (.1) AT3G50740 340 / 3e-112 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT5G66690 337 / 6e-111 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT2G18570 308 / 4e-100 UDP-Glycosyltransferase superfamily protein (.1) AT2G18560 273 / 2e-87 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 263 / 7e-83 UDP-Glycosyltransferase superfamily protein (.1) AT3G16520 263 / 9e-83 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G041900 [exp] 569 / 0 AT4G01070 295 / 2e-95 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.007G030500 [exp] 384 / 3e-129 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G138200 [exp] 384 / 6e-129 AT4G01070 539 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096100 [exp] 380 / 9e-128 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096000 [exp] 378 / 3e-127 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G168600 [exp] 376 / 2e-126 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.007G030400 [exp] 367 / 1e-122 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.007G030300 [exp] 342 / 3e-113 AT3G50740 496 / 1e-173 UDP-glucosyl transferase 72E1 (.1) Potri.007G029800 [exp] 330 / 2e-108 AT3G50740 478 / 3e-166 UDP-glucosyl transferase 72E1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003944 [exp] 471 / 3e-163 AT4G01070 400 / 1e-135 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005950 [exp] 400 / 2e-135 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029452 [exp] 394 / 2e-133 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029453 [exp] 350 / 4e-116 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 349 / 8e-116 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024037 [exp] 343 / 3e-113 AT2G18570 412 / 3e-140 UDP-Glycosyltransferase superfamily protein (.1) Lus10041713 [exp] 339 / 1e-111 AT2G18570 415 / 3e-141 UDP-Glycosyltransferase superfamily protein (.1) Lus10024035 [exp] 324 / 7e-106 AT3G50740 486 / 3e-169 UDP-glucosyl transferase 72E1 (.1) Lus10041715 [exp] 318 / 1e-103 AT3G50740 478 / 6e-166 UDP-glucosyl transferase 72E1 (.1) Lus10003900 [exp] 314 / 5e-102 AT4G01070 411 / 4e-140 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.014G041800.1 pacid=42762372 polypeptide=Potri.014G041800.1.p locus=Potri.014G041800 ID=Potri.014G041800.1.v4.1 annot-version=v4.1 ATGGTGTCTGTCAATAACGAAGAAACAATGGCAGTAGTTGAAAATGAAACCGCAAAACCCCATGTTGCAATCATGCCAAGCCCAGGCATCGGGCATATCA CCCCTCTTCTCGAGATCGCTAAACGACTGGTTGTCCTCCATGACTTTCATGTCAGTTTCATTGTCATCGCCACCAACGAAGCCTCTGCGGGCCAAGGCAA TCTACTCCAATCATCCACCCTACCTCCAGGCCTTGACGTGGTGTACCTCCCTACTGTCGATGTTTTTGCGGTCACAACAAATGGCATGCCGTTGGCCGCT CGTCTTTGTGCCATAGTAGAAGAAGCCATCAAGTCCCTAAAATCTGTCCTCGTAAAGTTAGGAAAGATCAAAGCTGTTGTCGTTGACTTGTTTTGCACCC AGGCTTTTGACATCTGCAGCGAGCTTTCAATTCCAGCTTACTTGTTCTTCACTGCATCCATTGCCTTGCTCAACTTTTCTCTGTATTTACCGACTCTTGA CCGTGAAGTGGAGGGCGAATTTGTTGATCTCCCCGAACCTGTTAAGGTCCCTGGTTGCCCTCCAATTCGACCTGAAGACCTCTTGGACCAGGTCAAAAAC CGTAAGATTGATGAGTACAAATGGTATTTATTTCACTCCAGCAGGTTCCATTTGGGAGCTGGAATATTTCTCAATTCCTGGGAGGATCTTGAACCAGCGA ACTTTAAAGCTATCACAGAGGATCCATTCTTCAAACAGATCCACACACCACCGGTTCACCCTGTTGGACCCCTAATCAAAATAGAAGAGCCTCTGACTGC CTCAGATGCTGACTGCCTGGCCTGGTTAGACAAGCAACCTCCTAATTCAGTTCTTTTTGTGTCACTAGGCAGTGGCGGTACGTTAACAGTTGAGCAACTC ACTGAATTAGCATGGGGACTTGAATTGAGCCATCAAAGGTTCATTTTTGTTGTTCGTATGCCAACAAATAGTAGCGCCTCCGCAGCATTTTTCAATGCAG GCAGTGATGTCAGTGATCCAAAGACATATCTGCCAACAGGATTTTTGGAGAGGACACAAGAAAGGGGGCTGGTGGTGCCATCATGGGCCCCGCAAGTTCT GGTGCTCAAACACCCATCAACCGGCGGGTTTTTAACACACTGTGGGTGGAACTCAACGTTGGAGGCTGTGACTCATGGTATGCCTATGATCGCATGGCCG CTCTATGCGGAACAGCGAATGAATGCTACAATTCTTGCAGAGGAAATTGGAATAGCTATCAAGCCAGTGGCGGAGCCAGGAGCGAGCTTGGTGGGACGTG AAGAGGTAGAAAGAGTGGTGAGACTTGCGATATTAGAAGGGAAAGAGATGAGGAAAAAGATTGAAGAGCTCAAAGATAGTGCTGCAAAAGCCATGGAGAT TGGCGGGTCGTCTTATGACTCGCTAGCTTGTTTGGCCAAGGAATGGAAGTCTTAA
AA sequence Show only first row Show all	>Potri.014G041800.1 pacid=42762372 polypeptide=Potri.014G041800.1.p locus=Potri.014G041800 ID=Potri.014G041800.1.v4.1 annot-version=v4.1 MVSVNNEETMAVVENETAKPHVAIMPSPGIGHITPLLEIAKRLVVLHDFHVSFIVIATNEASAGQGNLLQSSTLPPGLDVVYLPTVDVFAVTTNGMPLAA RLCAIVEEAIKSLKSVLVKLGKIKAVVVDLFCTQAFDICSELSIPAYLFFTASIALLNFSLYLPTLDREVEGEFVDLPEPVKVPGCPPIRPEDLLDQVKN RKIDEYKWYLFHSSRFHLGAGIFLNSWEDLEPANFKAITEDPFFKQIHTPPVHPVGPLIKIEEPLTASDADCLAWLDKQPPNSVLFVSLGSGGTLTVEQL TELAWGLELSHQRFIFVVRMPTNSSASAAFFNAGSDVSDPKTYLPTGFLERTQERGLVVPSWAPQVLVLKHPSTGGFLTHCGWNSTLEAVTHGMPMIAWP LYAEQRMNATILAEEIGIAIKPVAEPGASLVGREEVERVVRLAILEGKEMRKKIEELKDSAAKAMEIGGSSYDSLACLAKEWKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G041800 [exp]	0	1
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.006G058200 [exp]	1.41	0.9891	Pt-CYP93.2
AT3G06880			Transducin/WD40 repeat-like su...		Potri.005G240100 [exp]	3.60	0.9761
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.006G057900 [exp]	3.74	0.9857
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176100 [exp]	4.24	0.9842	2OGox3
AT1G61050			alpha 1,4-glycosyltransferase ...		Potri.004G039300 [exp]	4.58	0.9794
					Potri.013G070350 [exp]	4.89	0.9771
AT4G26010			Peroxidase superfamily protein...		Potri.013G066800 [exp]	6.70	0.9786
AT2G01900			DNAse I-like superfamily prote...		Potri.012G041600 [exp]	7.07	0.9784
AT2G01900			DNAse I-like superfamily prote...		Potri.015G032200 [exp]	7.34	0.9806
AT3G14470			NB-ARC domain-containing disea...		Potri.004G196100 [exp]	9.48	0.9704

Compare expression of checked genes

Potri.014G041800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.