Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47750 327 / 6e-114 PEX11A peroxin 11A (.1) AT3G47430 100 / 2e-25 PEX11B peroxin 11B (.1) AT1G01820 49 / 7e-07 PEX11C peroxin 11c (.1) AT2G45740 47 / 4e-06 PEX11D peroxin 11D (.1.2.3) AT3G61070 46 / 9e-06 PEX11E peroxin 11E (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G134000 [exp] 431 / 8e-155 AT1G47750 332 / 8e-116 peroxin 11A (.1) Potri.003G108900 [exp] 100 / 1e-25 AT3G47430 324 / 1e-113 peroxin 11B (.1) Potri.001G124400 [exp] 99 / 1e-24 AT3G47430 329 / 1e-115 peroxin 11B (.1) Potri.002G153800 [exp] 48 / 2e-06 AT2G45740 400 / 1e-143 peroxin 11D (.1.2.3) Potri.014G076400 [exp] 44 / 4e-05 AT2G45740 392 / 4e-140 peroxin 11D (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003945 [exp] 342 / 2e-119 AT1G47750 322 / 8e-112 peroxin 11A (.1) Lus10029260 [exp] 332 / 3e-115 AT1G47750 318 / 4e-110 peroxin 11A (.1) Lus10038925 [exp] 96 / 1e-23 AT3G47430 321 / 3e-112 peroxin 11B (.1) Lus10027213 [exp] 50 / 2e-07 AT3G47430 200 / 8e-66 peroxin 11B (.1) Lus10041368 [exp] 49 / 1e-06 AT1G01820 416 / 1e-149 peroxin 11c (.1) Lus10036560 [exp] 47 / 3e-06 AT1G01820 416 / 2e-149 peroxin 11c (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05648 [poplar] [flax] PEX11 Peroxisomal biogenesis factor 11 (PEX11)
Representative CDS sequence Show only first row Show all	>Potri.014G042000.1 pacid=42764365 polypeptide=Potri.014G042000.1.p locus=Potri.014G042000 ID=Potri.014G042000.1.v4.1 annot-version=v4.1 ATGGATCCCAAGCCTTCACCAACCCCACAAAACGCCAATGAAATCCCTAATAAACAGGGACAAAGAGACTTTTTGAATCATTTAGAGGTATACCTTGCAA AGCGAGATGGGGTTGACAAGCTCCTCAAGATCTCACGTTACGCAACCAAGATCATCTTAGCCTCATCCGTCCTCCCCGAAACCTTAATCGTAACGAAACG ACTCAAGAGTTTCGAATCAAGTGTTGGACTCAGTCGCAAAGCATTCCGACTTGGGAAATTCGTTCAAGATGTCAACGCATTAAGAGGCTCTCATTTTGAT TCAAAACAAGAAATCATCCTTTCCTTCATTGCCTATGGAGGTGAAGGTTTGTATTATTTTGTTGAGCAATTTGTTTGGTTGGCTAAATCGGGGTTGATCG ATAGCAAACACTCCAAAAGTTTAGGAAAAATCAGTGCTTGGGCGGAGTTTGTTGGGTATATTGGGAGTATTTCTTTGAAATTTAGAGATTTAAAGAAATT GAGTGAAGATGAGGTGTGCCTGGAATCCAGCGTTGAAATTGCAGTCACGAGAGGAGTTGGGCGTCAAGAGGAAGAGAGGAGATTGTGGAAGCTGAGAGAG AAGAAGCTGATGAAGAAATTATCAATTGTGCAGGATTTTGCTGATGGGCTAATGGCTCTGGCTGATATTCGTGACGGCAGAGGGCAATTTTCAGGCCCCC TTTTGGTATCTTGTGCAGGCCTTTTATCTGCTCTTATTAGTACTCATAAGAATTGGGTCTCTTGCTGA
AA sequence Show only first row Show all	>Potri.014G042000.1 pacid=42764365 polypeptide=Potri.014G042000.1.p locus=Potri.014G042000 ID=Potri.014G042000.1.v4.1 annot-version=v4.1 MDPKPSPTPQNANEIPNKQGQRDFLNHLEVYLAKRDGVDKLLKISRYATKIILASSVLPETLIVTKRLKSFESSVGLSRKAFRLGKFVQDVNALRGSHFD SKQEIILSFIAYGGEGLYYFVEQFVWLAKSGLIDSKHSKSLGKISAWAEFVGYIGSISLKFRDLKKLSEDEVCLESSVEIAVTRGVGRQEEERRLWKLRE KKLMKKLSIVQDFADGLMALADIRDGRGQFSGPLLVSCAGLLSALISTHKNWVSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47750		PEX11A	peroxin 11A (.1)		Potri.014G042000 [exp]	0	1
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.012G138900 [exp]	2.82	0.6738
AT1G68490			unknown protein		Potri.012G056500 [exp]	11.87	0.6383
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Potri.001G471400 [exp]	18.70	0.6426	Pt-ARP8.1
AT3G07580			unknown protein		Potri.014G172600 [exp]	18.97	0.5832
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Potri.001G148000 [exp]	26.15	0.5779	CXIP4.1
AT5G10730			NAD(P)-binding Rossmann-fold s...		Potri.018G013400 [exp]	42.66	0.5611
AT4G38060			unknown protein		Potri.002G106300 [exp]	43.63	0.5742
AT4G35860		ATGB2, AtRABB1b...	GTP-binding 2 (.1.2)		Potri.009G159600 [exp]	45.35	0.5658	Pt-ATGB2.1
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Potri.005G033800 [exp]	45.89	0.4998
AT3G07260	FHA		SMAD/FHA domain-containing pro...		Potri.002G245900 [exp]	61.87	0.5480

Compare expression of checked genes

Potri.014G042000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.