Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80950 506 / 6e-180 Phospholipid/glycerol acyltransferase family protein (.1) AT2G45670 142 / 3e-37 calcineurin B subunit-related (.1.2) AT5G60620 51 / 6e-07 GPAT9 glycerol-3-phosphate acyltransferase 9 (.1) AT4G30580 43 / 0.0003 LPAT1, ATS2, EMB1995 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G134100 [exp] 656 / 0 AT1G80950 476 / 1e-167 Phospholipid/glycerol acyltransferase family protein (.1) Potri.014G074300 [exp] 138 / 7e-36 AT2G45670 710 / 0.0 calcineurin B subunit-related (.1.2) Potri.002G151800 [exp] 134 / 2e-34 AT2G45670 716 / 0.0 calcineurin B subunit-related (.1.2) Potri.009G143200 [exp] 53 / 2e-07 AT5G60620 679 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.004G183300 [exp] 52 / 3e-07 AT5G60620 686 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.006G183700 [exp] 46 / 4e-05 AT4G30580 388 / 2e-134 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1) Potri.011G138900 [exp] 43 / 0.0002 AT4G30580 73 / 2e-14 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003950 [exp] 582 / 0 AT1G80950 492 / 4e-174 Phospholipid/glycerol acyltransferase family protein (.1) Lus10032706 [exp] 453 / 2e-159 AT1G80950 378 / 5e-130 Phospholipid/glycerol acyltransferase family protein (.1) Lus10032707 [exp] 143 / 5e-42 AT1G80950 125 / 1e-35 Phospholipid/glycerol acyltransferase family protein (.1) Lus10036544 [exp] 136 / 3e-35 AT2G45670 692 / 0.0 calcineurin B subunit-related (.1.2) Lus10015853 [exp] 136 / 4e-35 AT2G45670 672 / 0.0 calcineurin B subunit-related (.1.2) Lus10009312 [exp] 135 / 9e-35 AT2G45670 671 / 0.0 calcineurin B subunit-related (.1.2) Lus10041384 [exp] 133 / 5e-34 AT2G45670 647 / 0.0 calcineurin B subunit-related (.1.2) Lus10023947 [exp] 54 / 7e-08 AT5G60620 655 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10014443 [exp] 54 / 1e-07 AT5G60620 617 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10036259 [exp] 42 / 0.001 AT4G30580 340 / 6e-116 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF01553 [poplar] [flax] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.014G042200.1 pacid=42763541 polypeptide=Potri.014G042200.1.p locus=Potri.014G042200 ID=Potri.014G042200.1.v4.1 annot-version=v4.1 ATGGATACCGAGCTCAAATCCATGAATCCGGACCCGCCCAAACCCGAGCAACCCGACCCGGCATCCCGAGACGATGGCTCGAACTCGAAAGACGACCGTC CGCTGCTTAAATCGGACTCGAACAGAATCAGCTCAACAACAGGTGAGAGCATCGAGGAGCTGGAGAAAAAATTCGCTGCGTATGTCCGCAATGACGTGTA CGGTCCGATGGGACGTGGGGAGTTACCATTGGTCGAGAAAGTTCTGTTAGGAATCGCGGTGGTTACGCTGGTGCCGATACGATTTGTGCTCGCATTGATT ATATTGGTGGTGTATTATATAATTTGCAGGGTGTGTACGCTGTTTTCGGCGCCGAATCGGGACGAGGAGGAGGAGCAGGAGGATTTTGCGCATATGGGAG GGTGGAGAAGGGCGGTTATTGTTTGGTGTGGGAGGTTTTTGTCTAGAATGCTCCTTTTCGTGTTAGGGTTTTATTGGATTAGTGTAAGCTATAGAGATAT TGAACTGCCTGATCAAAATAAATCTTCTTCCCAGAATGAGGGAAAAGATCAATCTGAAGAACCGGAAAGACTGGGGGCAATAATATCGAATCATGTTTCA TATTTAGATATCTTGTACCACATGTCTGCTTCTTTTCCAAGCTTTGTTGCCAAGAGATCAGTGGCTAAACTTCCTCTGGTTGGTCTCATCAGTAAGTGCC TTGGTTGTGTATATGTTCAACGGGAGTCGAAGTCATCTGACTTCAAGGGTGTTTCAGGCATTGTGACTGAAAGAGTTAAAGAATCTCATGAAAATAGCTC TGCTCCTATGATGATGCTTTTTCCTGAAGGCACAACAACAAATGGAGACTTCCTTCTACCGTTTAAGACAGGTGCATTCTTAGCAACAGCTCCTGTGCGT CCAGTGATCCTTAGGTATCCTTACCAACGATTCAGTCCTGCCTGGGATTCAATATCTGGGGCGCTCCATGTGTTCTATCTTTTCTGTCAATTCATAAATC ATATGGAAGCAGTATGGCTTCCTGTTTACTACCCATCACAGGAAGAAAAGGACGATCCAAAGCTATATGCTAGTAATGTCCGACGGTTGATGGCCCGTGA GGGTAATTTAAAAATGTCAGATATTGGACTTGCCGAGAAGCGAATATATCATACTGCTCTGAATGGTAATATTAGCCTGCCTAGTGTTTTGCATCAGAAA GACGATTGA
AA sequence Show only first row Show all	>Potri.014G042200.1 pacid=42763541 polypeptide=Potri.014G042200.1.p locus=Potri.014G042200 ID=Potri.014G042200.1.v4.1 annot-version=v4.1 MDTELKSMNPDPPKPEQPDPASRDDGSNSKDDRPLLKSDSNRISSTTGESIEELEKKFAAYVRNDVYGPMGRGELPLVEKVLLGIAVVTLVPIRFVLALI ILVVYYIICRVCTLFSAPNRDEEEEQEDFAHMGGWRRAVIVWCGRFLSRMLLFVLGFYWISVSYRDIELPDQNKSSSQNEGKDQSEEPERLGAIISNHVS YLDILYHMSASFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESKSSDFKGVSGIVTERVKESHENSSAPMMMLFPEGTTTNGDFLLPFKTGAFLATAPVR PVILRYPYQRFSPAWDSISGALHVFYLFCQFINHMEAVWLPVYYPSQEEKDDPKLYASNVRRLMAREGNLKMSDIGLAEKRIYHTALNGNISLPSVLHQK DD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80950			Phospholipid/glycerol acyltran...		Potri.014G042200 [exp]	0	1
AT3G57200			unknown protein		Potri.016G041900 [exp]	4.79	0.8589
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Potri.016G125500 [exp]	5.56	0.8946
AT4G32140			EamA-like transporter family (...		Potri.018G024700 [exp]	7.41	0.8828
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.001G292900 [exp]	10.39	0.8768
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.014G080900 [exp]	10.58	0.8879
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.014G147000 [exp]	14.56	0.8853	Pt-RIC2.1
AT4G14500			Polyketide cyclase/dehydrase a...		Potri.010G076500 [exp]	17.83	0.8816
AT5G53340			Galactosyltransferase family p...		Potri.003G136000 [exp]	19.20	0.8858
AT3G15220			Protein kinase superfamily pro...		Potri.011G116300 [exp]	20.66	0.8791
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Potri.011G061500 [exp]	20.97	0.8735	ARAC2.1

Compare expression of checked genes

Potri.014G042200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.