Plant FIBer expression Database

Potri.014G042550 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.014G042550.1 pacid=42764511 polypeptide=Potri.014G042550.1.p locus=Potri.014G042550 ID=Potri.014G042550.1.v4.1 annot-version=v4.1
ATGTGGAAAAGGCAAGTGCTGTCTCTGTCAAATATTTTAAGCAAAGCTGCAAGGAGAATTTATGTCCCTCAACTGCCATTACAGATCCCACGTTGTCTTT
TCGGGAAGTGTCAGAAGGCGGACAAAGTAGCTAAAGTAGCCTCTGGCAAGGTAGAAAGTATCGCACAGAGTTTTGGTGATGCTTTAAGAAACGACAGTTT
ACTTCCAAAACAAACATATGGAAACGACAGGCATGTTATGTGCACAAAACAGAGGCTGCAGTGCATTAGAAAGGAACTCAAGCCTTTTCCCCTTTGCGTT
CTGACAGGTTTGAGCCTTGAGGGTTTTTCTCGGTAG
AA sequence
>Potri.014G042550.1 pacid=42764511 polypeptide=Potri.014G042550.1.p locus=Potri.014G042550 ID=Potri.014G042550.1.v4.1 annot-version=v4.1
MWKRQVLSLSNILSKAARRIYVPQLPLQIPRCLFGKCQKADKVAKVASGKVESIAQSFGDALRNDSLLPKQTYGNDRHVMCTKQRLQCIRKELKPFPLCV
LTGLSLEGFSR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.014G042550
[exp]
0 1
AT1G30870 Peroxidase superfamily protein... Potri.003G156100
[exp]
2.44 0.8276
AT4G33880 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (... Potri.002G119200
[exp]
4.89 0.7728
AT4G33880 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (... Potri.001G294300
[exp]
15.81 0.7045
AT5G44265 Bifunctional inhibitor/lipid-t... Potri.017G013200
[exp]
19.49 0.6665
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.018G134000
[exp]
34.74 0.6852
AT3G59850 Pectin lyase-like superfamily ... Potri.007G144500
[exp]
34.92 0.6639
AT5G49630 AAP6 amino acid permease 6 (.1) Potri.006G236100
[exp]
36.41 0.6871
AT3G19920 unknown protein Potri.007G073600
[exp]
37.78 0.6871
Potri.008G053150
[exp]
39.11 0.6871
Potri.008G106450
[exp]
42.76 0.6082

Potri.014G042550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.