Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75100 262 / 1e-77 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1) AT4G36520 145 / 1e-35 Chaperone DnaJ-domain superfamily protein (.1) AT4G12770 142 / 5e-35 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12780 140 / 4e-34 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G21660 130 / 6e-32 Chaperone DnaJ-domain superfamily protein (.1) AT1G75310 131 / 4e-31 AUL1 auxilin-like 1, auxin-like 1 protein (.1) AT1G30280 112 / 3e-26 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G134300 [exp] 958 / 0 AT1G75100 192 / 3e-52 J-domain protein required for chloroplast accumulation response 1 (.1) Potri.014G197600 [exp] 146 / 3e-36 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G217200 [exp] 142 / 1e-34 AT4G12780 319 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.007G022600 [exp] 142 / 1e-34 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G120700 [exp] 139 / 9e-34 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G181700 [exp] 134 / 4e-33 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G081500 [exp] 130 / 5e-32 AT1G30280 228 / 2e-69 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G079200 [exp] 131 / 6e-32 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G229300 [exp] 120 / 1e-27 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018811 [exp] 211 / 6e-60 AT1G75100 183 / 3e-50 J-domain protein required for chloroplast accumulation response 1 (.1) Lus10032709 [exp] 197 / 4e-54 AT1G75100 166 / 7e-44 J-domain protein required for chloroplast accumulation response 1 (.1) Lus10041769 [exp] 144 / 4e-35 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1) Lus10016079 [exp] 142 / 1e-34 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012303 [exp] 141 / 2e-34 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10018854 [exp] 132 / 5e-32 AT1G21660 402 / 5e-134 Chaperone DnaJ-domain superfamily protein (.1) Lus10028548 [exp] 131 / 1e-31 AT1G21660 402 / 1e-133 Chaperone DnaJ-domain superfamily protein (.1) Lus10012302 [exp] 131 / 6e-31 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10016078 [exp] 129 / 3e-30 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10024270 [exp] 114 / 1e-25 AT1G75310 290 / 2e-80 auxilin-like 1, auxin-like 1 protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G042600.1 pacid=42764311 polypeptide=Potri.014G042600.1.p locus=Potri.014G042600 ID=Potri.014G042600.1.v4.1 annot-version=v4.1 ATGGAGAGGTTTTCTCAGAGAGAAAGTGTTCTGTTAGGTTATAATCTTCAAAGACAATCCAAAAACCATCCAGGCTCTTCTTCAAATAGCCAACATGGAA ACTCTGATATTGATTTTATAGATGTTTTTGGTGGCCCACCGAGGCGATCGTCGCTTCAGGAGGTGCGATCTAGTTTTGCTGAAACGACAGATTCATTTGT TTCAAGAAGTGGTGATGTTGATACCATGTTGTCTCGCAACAGTTTGTCGGGTTTAAATGAGAAGCCAGTGTTTGGAGATGAAAATGTCAATAGAAGGCGA TATCCAAGAAATGATTTCTTTGATGATATTTTCAGAGGCAATAAGTCTTTGAGTTCTCCTCCGAAGAAGCATGACCTTGATTCACTTTCTTCAACTCCAG GTTCAAGAGTCCTAAGCCCTACTGGACAGCTGCCACCTAGAGCTGATCCCTGGAGTCCATCTCTGCCTGCACAATTCAGCCTCTCTGCCAAACTGAGTAA GCGGACAGACTTGCCAACATTTAACTCTAGCGCCCATAGCATGCACAAAAATAAGGATGGTGCTTCATATGGCGTAGGCAATTATGCACATTCTGCAAGC CAAACGGACCACGTTAGAGACGAGTTGACTAACGATATCTCTAGGCAAAGCACTTTATCGAAGGAGCTATCTCTTACCAGCGAGGAGTCATCAAACTCGA CCAAACATGAAGAAACAGACACAAACACAAATTTGAAAAGTGATTCAGATAGTTCTGATGTTCCAACAAATGGAAACCAGTCTCATTTTTCTATATACAA GTGGGCAAGCGAAGGAATACCCTTTGTGATGTCCCTTAGAGGAGCTACCAAATCAAGACTGGATGAGAATTGTGAACTTCAGAGATGTTCAAGTGCTAGT GGATGGATAGCAAGCGAGGGTATAGCAAGAGAATTACGATCAGCAAATCCACATGATATCGATGTTCCCTCATTCAGTAGTCACATCGAGCTTAATCAAC AAGATAATCGCTTCCTCTTTGATAAGAGCATTCAGTGTGAAGTAGAACCGTGTCAGATTGTTGAGGACACAATTTTTCCTGTACCTGAGTTAGATACTCC AAGCACTCATCAAGTGATTGTTGAAGATGGTCCTGAAATGGACTTATCTGAAAAAACAAAGGAACGAATTTCTGTAGTTACGCTTGAGGATCGCAAGACT GAGTTAAAACCACCACGTTCCCTGTTATCCGAGAATGATGATGAGCAATGTATTGATGAGATGACTAGAAAAAATGGTTTGAAAGAAAGAAAGGCAGAAA GCACCAAAAAACCATCTGCAGTTTTTGATGTTAGTGAAAACGTAAAGGATCAAGATGAGAAAAGAACTACAGCGAATAATGTAGAAGTGGATAAAGCTGA CTTTCAATATCCACCAACAAAATCAAGAGACAGCCTTGAGAAGAACAGACTTAGGGGAAAGGTCAAGGAATTTGTTAAAATTTTCAATCGGGCAGGTTCA GAAAAACCCAACTTTGATCTTAATGACTCTCAACATCAGAGTTCCGGACGAAAGGAAAGAATAAAATTCAATACTGACGATACCAGAAATGAGAAAATGC ACTCGCGTAATGTTAACAATAAAAACATGCCAGATGCTTCCATCCTGGTGAAAAAATGTCTTAAGCAATCCGAGAAACAACATCCCGAGACAAAGGCGAA CAATCTCAGGTCCGAAAGCGTTTCTTCTGGACGTAAGGATAGCTCAGTGTCAACTGCAGCTTACATTCCTGATGGCTTAGAATCAACCATTGCAGATACA GATATGTCCTTCCTCCTGATTACAGAATTAGCCCAGGATGAGGAAAGGGAGCTCCAAACCAGCGATAACCATGAGGAGATCCAAGTCATTGATGATAAAA TACAGAAGTGGTCGAAAGGAAAGGAAGGCAACATACGCTCCCTGTTGTCAACTTTACAATATGTCCTTTGGTCTGGAAGTGGGTGGAATCCTGTGCCTCT TGTTGATATAATTGAAGGAAATGCGGTGAAAAGAACATATCAAAAGGCCTTACTCTGTCTACACCCTGATAAACTACAGCAGAAAGGTGCTACCTCGCAT CAAAAATACACGGCAGAAAAAATCTTCGATATTTTGCAGGAAGCATGGACTCTTTTCAACTCACTCGGAGCAGTGTGA
AA sequence Show only first row Show all	>Potri.014G042600.1 pacid=42764311 polypeptide=Potri.014G042600.1.p locus=Potri.014G042600 ID=Potri.014G042600.1.v4.1 annot-version=v4.1 MERFSQRESVLLGYNLQRQSKNHPGSSSNSQHGNSDIDFIDVFGGPPRRSSLQEVRSSFAETTDSFVSRSGDVDTMLSRNSLSGLNEKPVFGDENVNRRR YPRNDFFDDIFRGNKSLSSPPKKHDLDSLSSTPGSRVLSPTGQLPPRADPWSPSLPAQFSLSAKLSKRTDLPTFNSSAHSMHKNKDGASYGVGNYAHSAS QTDHVRDELTNDISRQSTLSKELSLTSEESSNSTKHEETDTNTNLKSDSDSSDVPTNGNQSHFSIYKWASEGIPFVMSLRGATKSRLDENCELQRCSSAS GWIASEGIARELRSANPHDIDVPSFSSHIELNQQDNRFLFDKSIQCEVEPCQIVEDTIFPVPELDTPSTHQVIVEDGPEMDLSEKTKERISVVTLEDRKT ELKPPRSLLSENDDEQCIDEMTRKNGLKERKAESTKKPSAVFDVSENVKDQDEKRTTANNVEVDKADFQYPPTKSRDSLEKNRLRGKVKEFVKIFNRAGS EKPNFDLNDSQHQSSGRKERIKFNTDDTRNEKMHSRNVNNKNMPDASILVKKCLKQSEKQHPETKANNLRSESVSSGRKDSSVSTAAYIPDGLESTIADT DMSFLLITELAQDEERELQTSDNHEEIQVIDDKIQKWSKGKEGNIRSLLSTLQYVLWSGSGWNPVPLVDIIEGNAVKRTYQKALLCLHPDKLQQKGATSH QKYTAEKIFDILQEAWTLFNSLGAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75100		JAC1	J-domain protein required for ...		Potri.014G042600 [exp]	0	1
AT1G42550		PMI1	plastid movement impaired1 (.1...		Potri.002G006100 [exp]	4.47	0.9578
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088632 [exp]	4.89	0.9495
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043600 [exp]	5.29	0.9499
AT4G28290			unknown protein		Potri.019G100601 [exp]	7.74	0.9384
AT2G32830		PHT1;5, PHT5	PHOSPHATE TRANSPORTER 5, phosp...		Potri.001G318500 [exp]	8.00	0.9479	Pt-PHT5.1,PtrPHT1-12
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Potri.014G031100 [exp]	12.72	0.9346
					Potri.018G137700 [exp]	12.96	0.9359
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G014100 [exp]	13.85	0.9268
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.001G093300 [exp]	19.41	0.9305
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Potri.006G202100 [exp]	19.79	0.9354

Compare expression of checked genes

Potri.014G042600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.