Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16580 523 / 0 Protein phosphatase 2C family protein (.1) AT5G66720 382 / 4e-129 Protein phosphatase 2C family protein (.1.2) AT4G33500 161 / 1e-42 Protein phosphatase 2C family protein (.1) AT2G30170 136 / 4e-36 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G028900 [exp] 425 / 6e-146 AT5G66720 405 / 1e-139 Protein phosphatase 2C family protein (.1.2) Potri.005G125700 [exp] 421 / 3e-144 AT4G16580 373 / 3e-126 Protein phosphatase 2C family protein (.1) Potri.001G381000 [exp] 175 / 1e-50 AT5G66720 197 / 4e-60 Protein phosphatase 2C family protein (.1.2) Potri.011G102200 [exp] 169 / 6e-49 AT4G16580 191 / 4e-58 Protein phosphatase 2C family protein (.1) Potri.009G021300 [exp] 171 / 3e-48 AT4G16580 184 / 8e-54 Protein phosphatase 2C family protein (.1) Potri.011G013000 [exp] 153 / 5e-43 AT4G16580 175 / 6e-52 Protein phosphatase 2C family protein (.1) Potri.001G089201 [exp] 122 / 1e-32 AT4G16580 156 / 8e-46 Protein phosphatase 2C family protein (.1) Potri.001G282500 [exp] 114 / 6e-28 AT2G30170 382 / 1e-133 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016309 [exp] 643 / 0 AT4G16580 542 / 0.0 Protein phosphatase 2C family protein (.1) Lus10010797 [exp] 442 / 2e-153 AT4G16580 469 / 9e-165 Protein phosphatase 2C family protein (.1) Lus10014413 [exp] 355 / 3e-119 AT4G16580 390 / 4e-134 Protein phosphatase 2C family protein (.1) Lus10023916 [exp] 348 / 4e-116 AT4G16580 384 / 1e-130 Protein phosphatase 2C family protein (.1) Lus10001655 [exp] 133 / 6e-36 AT5G66720 127 / 6e-35 Protein phosphatase 2C family protein (.1.2) Lus10031355 [exp] 122 / 7e-31 AT2G30170 352 / 3e-122 Protein phosphatase 2C family protein (.1.2) Lus10010968 [exp] 120 / 2e-30 AT2G30170 364 / 9e-127 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF07228 [poplar] [flax] SpoIIE Stage II sporulation protein E (SpoIIE)
Representative CDS sequence Show only first row Show all	>Potri.014G042800.1 pacid=42762966 polypeptide=Potri.014G042800.1.p locus=Potri.014G042800 ID=Potri.014G042800.1.v4.1 annot-version=v4.1 ATGCCGTCTACGTATTTTTCAAGGTTAAGGAGTGCGGTTCAGAATGGGATTCAGAGATCGGGAATAGGACAAGAAGGTGTACTGCAAAATTTTGAGAGTC TGATTGGGCAAGGAAAGTTTAGATTCTGCAACTATAGGTTATTTCATTCTGTATGTGTTGCATCGCTTACAGATTTACAACTACTGTTGAGACCCGGTAC AGTTGTTGCTGCCAGTTCTGATTCACTGGTAGTTAACCGAAAAAGGAATATCTCTGTTGTTGGAGCAGTTTCTCGTACACTTTCTGTACCCTCTGTATCA GGCCCTTCGTTTCAGGTTTGTGGCTATCACATAGATCGTGCCCTTTGTGACAACAATCAAATATTGGCCAGTGGGAAGCCTTACAATAAGCCAATGGCTG CTAGAGCATCAAGAGCTGTATTTGGTGAGAGTTTATTAGAGAATCTGACTTCAAGGGTTGGGCATCTTCCCTCATCGACAAACAATCCCTGCATCTCTTA TGGCAGCAGTAGTTCCCAGAGTTTCAGAAAGGCTAGCATGAGTTTGAAAAACCAAGAGCAACCTACCAATTCTCCAATTTATGGATATTTTGTCTATAAT GTTGCAAAGAGGTGGTGTGACTTTTCTCCATACATGGAGACGGGATTTAGAGATTTCCAAAGTTCAGCGCATTCATGCTTTGCAGCTGGAACTGCTCCTG ATGTGACCTATGAGAATTCTACCCGTGAGGAACAGCCTGAAGGTTCTGCTTCATCAGAACAGAAGATTTCAACTGGCAAAATGCTCAAGCTACTCTCGGG ATCATGCTACCTGCCCCATCCTGATAAAGAAGAGACTGGTGGAGAGGATGCCCACTTTATTTGTGCAGATGAACACGCTGTTGGTGTAGCTGATGGTGTG GGTGGTTGGGCTGATCATGGTATTGATTCTGGGCTGTATTCTCGGGAGCTCATGTCTAATTCAGTTACTGCAGTTCAAGAGGAGCCCAAGGGCTCAATTG ATCCAGCTAGGGTCCTGGAGAAAGCTCACTCTAGCACTAAAGCCAAAGGTTCCTCAACAGCATGCATCATAGCACTCACAGACCAGGGTCTCCATGCGAT CAATTTAGGGGATAGTGGGTTTATAGTGGTTCGAGATGGATGCACCGTCTTCCGATCTCCTGTGCAGCAGCATGGTTTTAATTTCACTTATCAACTTGAG AATGGAAACAATGGTGATCTGCCTAGCTCTGGCCAGGTTTTCACAATTCCTGTTGCTCCTGGAGATGTTATAGTTGCCGGAACAGATGGATTGTTTGACA ACTTGTACAACAATGAAATTAATGCTGTGGTGGTTCATGCCATGAGAGCTGGCTTAGAGCCTCAGGCAACAGCTCAGAAAATAGCTGCATTAGCACGGCA ACGAGCCCAAGATAAAGACCGGCAGACCCCATTCTCCACTGCTGCACAAGATGCTGGGTTTCGCTATTATGGTGGCAAGCTTGATGACATCACTGTTGTT GTTTCATATATTACCAGCTCTGACGATGTATGA
AA sequence Show only first row Show all	>Potri.014G042800.1 pacid=42762966 polypeptide=Potri.014G042800.1.p locus=Potri.014G042800 ID=Potri.014G042800.1.v4.1 annot-version=v4.1 MPSTYFSRLRSAVQNGIQRSGIGQEGVLQNFESLIGQGKFRFCNYRLFHSVCVASLTDLQLLLRPGTVVAASSDSLVVNRKRNISVVGAVSRTLSVPSVS GPSFQVCGYHIDRALCDNNQILASGKPYNKPMAARASRAVFGESLLENLTSRVGHLPSSTNNPCISYGSSSSQSFRKASMSLKNQEQPTNSPIYGYFVYN VAKRWCDFSPYMETGFRDFQSSAHSCFAAGTAPDVTYENSTREEQPEGSASSEQKISTGKMLKLLSGSCYLPHPDKEETGGEDAHFICADEHAVGVADGV GGWADHGIDSGLYSRELMSNSVTAVQEEPKGSIDPARVLEKAHSSTKAKGSSTACIIALTDQGLHAINLGDSGFIVVRDGCTVFRSPVQQHGFNFTYQLE NGNNGDLPSSGQVFTIPVAPGDVIVAGTDGLFDNLYNNEINAVVVHAMRAGLEPQATAQKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVV VSYITSSDDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16580			Protein phosphatase 2C family ...		Potri.014G042800 [exp]	0	1
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Potri.002G221500 [exp]	2.00	0.8315
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.009G108500 [exp]	3.00	0.8103
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Potri.001G137200 [exp]	8.48	0.7751	CEO1.2
AT5G61530			small G protein family protein...		Potri.004G233400 [exp]	10.00	0.8082
AT1G04970			lipid-binding serum glycoprote...		Potri.001G358800 [exp]	12.24	0.8131
AT2G47710			Adenine nucleotide alpha hydro...		Potri.002G193800 [exp]	17.14	0.7794
AT3G14205			Phosphoinositide phosphatase f...		Potri.001G163900 [exp]	17.49	0.7759
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Potri.010G249200 [exp]	19.62	0.7820
AT3G14470			NB-ARC domain-containing disea...		Potri.001G379700 [exp]	20.09	0.8091
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Potri.006G249700 [exp]	21.07	0.7806

Compare expression of checked genes

Potri.014G042800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.