Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75130 495 / 2e-172 CYP721A1 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) AT2G26710 380 / 5e-127 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14690 357 / 4e-118 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14610 355 / 3e-117 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14640 348 / 1e-114 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14660 347 / 4e-114 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14680 340 / 2e-111 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT2G46950 335 / 7e-109 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT3G14650 331 / 3e-108 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1) AT3G14630 330 / 1e-107 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G043100 [exp] 712 / 0 AT1G75130 516 / 2e-180 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.002G134500 [exp] 709 / 0 AT1G75130 540 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.005G035200 [exp] 633 / 0 AT1G75130 547 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.014G180500 [exp] 586 / 0 AT1G75130 494 / 6e-172 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.002G263800 [exp] 526 / 0 AT1G75130 493 / 2e-171 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.018G070900 [exp] 381 / 2e-127 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G154500 [exp] 374 / 7e-125 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G117600 [exp] 339 / 3e-111 AT3G14620 479 / 7e-166 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.011G101500 [exp] 334 / 5e-109 AT3G14690 609 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016310 [exp] 592 / 0 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10010821 [exp] 508 / 3e-177 AT1G75130 522 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10010802 [exp] 421 / 1e-145 AT1G75130 432 / 6e-150 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10033044 [exp] 375 / 7e-125 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10042486 [exp] 326 / 6e-106 AT3G14690 580 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10042487 [exp] 324 / 4e-105 AT3G14690 604 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10026178 [exp] 323 / 9e-105 AT3G14690 607 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10017771 [exp] 320 / 6e-104 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10017595 [exp] 315 / 1e-101 AT5G38450 697 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10036818 [exp] 311 / 3e-100 AT2G26710 369 / 2e-122 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.014G043000.1 pacid=42763303 polypeptide=Potri.014G043000.1.p locus=Potri.014G043000 ID=Potri.014G043000.1.v4.1 annot-version=v4.1 ATGCATCTTCTTTTTATTGTGCTTGTGTTACTAGTCGTCTGCATCTTCAAATTTATACACTCGGTGATATGGGTGCCATGGAGAATACAAGTTTACTTCA GAAAGCAAGGCATAAGTGGCCCTAACTACCGTCCAATCTTCGGAAACACACCCGAGTATCGCCGTCTATTTAGTGAAGTAAGATCAAAGCCAATGCCTTT TAACCACGATATCGTCCACCGAGTTGCCCCATTTTACTACGAGTGGTCGCGCAAGTATGGGAAGACGTTCCTCTACTGGTTCGGAACCAAGCCAACGTTG GCTATATCGGACCCTGATATGATCAAGGAGGTTCTCATGAATACAGGTGATGGCTCGTTTCAGAAGGCTCGAAACAACCCTCTAGCCAAGCTGCTCTTTG GACAGGGACTTAATGGGTTGGATGGGGAGGAGTGGGCTCTTCATAGGAGGATCGCAAACCAGGCGTTTATGATTGAGCGGGTTAAGTGTTGGGTGCCAGA AATTGTGGAAAGCATTACCAAGATGCTAATCAAGTGGGAGGAAATAAGAGGAGGGAGAGATGAATTTGAGGTTGATGTGCATAGAGAGCTTCAAAACTTC ACCTCAGACGTTATAGCGAAAACGGCTTTTGGAAGCAATTATGAAGAAGGGAAACGTATATTTTTGTTACAAGATCAACACAAGTACCTTGCCTACCAGG CTTTTGGAAATGTCTATATTCCAGGGTTCAGGTTTTTGCCCACCAAAAAGAACAGGGAGAGGTGGAGATTCGACAGGGAAACTCGTGAAGCAATACGCAA ATTGATAAAAAATAACAACAGTGAAAGAGAGAATTCAAGAAACCTGCTCAGTCTGTTGATGTCTTCCTATAAAAATCAAGAGGGCGAAGAAGAGAAACTA GGGATTGAGGAGATTATAAACGAATGCAAGACCTTCTACTTTTCAGGAAAGGAATCTACTGCTGATCTTTTGACTTGGGCACTTCTCCTTTTAGCATTGC ATCAAGAATGGCAAAACAAGGCAAGAGAAGAAGTGTTTTCCATCTTCGGAGAGAATGAGTCTATAGCTGCAGAGAAGTTAAATGACCTTAAGATTGTGAA CTCAATTCTCTGTGAAACACAGCGACTTTATCCTCCAGTCGTGATGTTGCCGAGGCAAACATCTAAGAACGTAAAGTTGGGAACCCTTGACGTTCCTGCC GGCACTCATTTCTATTTAGCCTTGCCTTCTGTTCATCATGACCCTGATATATGGGGGAAAGATGCTAATGAGTTCAATCCCCTAAGATTCAATGAGCCAA GAAATCACTTGGCTTCATTTTTTCCATTTGGGATAGGTCCTAGAATGTGTGTTGGTAAAAATTTAGCAGTCATGGAGGTAAAAATTGTCCTAGCCATGAT AATAAGGAGTTACTCTTTCGTTGTGTCGCCCACCTATGTTCATGCACCAAGCCTCTTGCTGAGCACACAACCTCAATTTGGTGCACAGATCCTCTTTCGC AGGATTTAA
AA sequence Show only first row Show all	>Potri.014G043000.1 pacid=42763303 polypeptide=Potri.014G043000.1.p locus=Potri.014G043000 ID=Potri.014G043000.1.v4.1 annot-version=v4.1 MHLLFIVLVLLVVCIFKFIHSVIWVPWRIQVYFRKQGISGPNYRPIFGNTPEYRRLFSEVRSKPMPFNHDIVHRVAPFYYEWSRKYGKTFLYWFGTKPTL AISDPDMIKEVLMNTGDGSFQKARNNPLAKLLFGQGLNGLDGEEWALHRRIANQAFMIERVKCWVPEIVESITKMLIKWEEIRGGRDEFEVDVHRELQNF TSDVIAKTAFGSNYEEGKRIFLLQDQHKYLAYQAFGNVYIPGFRFLPTKKNRERWRFDRETREAIRKLIKNNNSERENSRNLLSLLMSSYKNQEGEEEKL GIEEIINECKTFYFSGKESTADLLTWALLLLALHQEWQNKAREEVFSIFGENESIAAEKLNDLKIVNSILCETQRLYPPVVMLPRQTSKNVKLGTLDVPA GTHFYLALPSVHHDPDIWGKDANEFNPLRFNEPRNHLASFFPFGIGPRMCVGKNLAVMEVKIVLAMIIRSYSFVVSPTYVHAPSLLLSTQPQFGAQILFR RI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.014G043000 [exp]	0	1
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G007900 [exp]	2.00	0.9679
AT1G52140			unknown protein		Potri.001G188900 [exp]	2.00	0.9588
AT1G30760			FAD-binding Berberine family p...		Potri.001G463100 [exp]	8.12	0.8865
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.002G134500 [exp]	8.83	0.9322	CYP721.5
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Potri.002G109601 [exp]	9.53	0.9317
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037700 [exp]	10.48	0.9333
AT1G14930			Polyketide cyclase/dehydrase a...		Potri.008G131200 [exp]	12.96	0.9070	MLP.3
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026200 [exp]	13.67	0.9018
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125601 [exp]	13.85	0.9260
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Potri.008G048300 [exp]	16.91	0.9123

Compare expression of checked genes

Potri.014G043000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.