Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75130 516 / 2e-180 CYP721A1 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) AT2G26710 391 / 2e-131 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14690 348 / 2e-114 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14610 347 / 2e-114 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT2G46950 346 / 4e-113 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT3G14630 341 / 5e-112 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14680 338 / 6e-111 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT2G46960 335 / 1e-109 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT3G14660 333 / 5e-109 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14640 328 / 9e-107 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G043000 [exp] 754 / 0 AT1G75130 495 / 2e-172 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.002G134500 [exp] 710 / 0 AT1G75130 540 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.005G035200 [exp] 670 / 0 AT1G75130 547 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.014G180500 [exp] 623 / 0 AT1G75130 494 / 6e-172 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.002G263800 [exp] 523 / 0 AT1G75130 493 / 2e-171 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.018G070900 [exp] 385 / 4e-129 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G154500 [exp] 384 / 9e-129 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G117600 [exp] 353 / 8e-117 AT3G14620 479 / 7e-166 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.011G101500 [exp] 345 / 2e-113 AT3G14690 609 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016310 [exp] 601 / 0 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10010821 [exp] 531 / 0 AT1G75130 522 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10010802 [exp] 451 / 3e-157 AT1G75130 432 / 6e-150 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10033044 [exp] 377 / 2e-125 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10017771 [exp] 332 / 1e-108 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10042487 [exp] 330 / 1e-107 AT3G14690 604 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10025756 [exp] 326 / 6e-106 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10026178 [exp] 325 / 2e-105 AT3G14690 607 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10042486 [exp] 316 / 7e-102 AT3G14690 580 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10025755 [exp] 326 / 3e-100 AT1G80300 923 / 0.0 nucleotide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.014G043100.1 pacid=42763397 polypeptide=Potri.014G043100.1.p locus=Potri.014G043100 ID=Potri.014G043100.1.v4.1 annot-version=v4.1 ATGCATCTTGTTTGTCTTGTTTATGTGTTACTACCAGTCTGCGTCCTAAGACTCATACACTCAATGATATGGGTTCCATGGAGAATCCATGTGCATTTTA GAAAGCAAGGCATCAGTGGTCCAAACTACCGCCCGATCTTTGGGAACACAGAAGAGTATCGTAATTCATTTACTGAAGCACGGAAGAAAACAATGCCTTT TAACCACAACATTGTCCATCGGGTAACCCCATTTTACCACGAGTGGTCACGCAAGTATGGGAAGACGTTCCTCTACTGGTTTGGAGTCATTCCCATATTG GCTACAGCTGATCTTGACATGATTAAGGACATTTTCATGAACACGGGTGGTGGATCATTTGAGAAGGTAAGGCTTAACCCTCAGGCTAAGCTGCTCTTCG GACAGGGGCTTAATGGTTTGGTCGGCGAGGAGTGGGCTCTTCATAGGAGGATCGCCAACCAAGCTTTTATGATGGAGCGGATTAAGTGTTGGGGGCTGGA TATTATGGCGAGCACTATGAAGATGCTAACAAAGTGGGAGGAAATAAGAGGAGAAAGAGATGAGTTTGAGATGGATGTACATAGAGAACTTCAAGACCTT GCATCAGACGTTATATCCAAAACAGCTTTTGGAAGTAATTATGAGGAGGGGAAGCGAGTATTCTCGTTACAGGACAAACAGAAGCACCTTGTCTTCGATG CTATAGGAAATGTCTACATCCCAGGTTTCAGGTTTTTGCCCACCAAGAAGAACAGAGAAAGGTGGAGAATAGAGAGGGAAACTCGTGCAGCAATAAGGAA TCTGATCAAAACTAACAGCAAAGCAAGAGAAAATTCAAGAAATCTACTTAGTTTACTGATGTCTTCTTATAAAAATCAAGATGGGAAGGAAGAGAAATTG GGGGTTGAGGAGATTATAAACGAATGCAAGGCCTTCTACTTTGCAGGAAAGGAATCCATGGCAGATCTTTTGACCTGGGCACTTCTCCTTTTAGCACAGC ATCAGGAATGGCAAGACAAGGCACGGGAAGAAGTGTTATCTGTCTGCAGAGGAAATGAAGTTCTTCTTTCAGAGAATGTAAATGATCTTAAGATTGTGAA CTTGATAATCCATGAAACACTTCGGCTTTACCCTCCAGCAGTGATGTTGATGAGGCAAACAACCAAAAACGTTAAGTTGGGAACCCTCGATGTTCCTGCT GGCACACAATTTTTCTTGGCCTTGCCTTCTATTCATCATGACACTGATATATGGGGAAAAGATGCTAACGAGTTCAATCCGCTGAGGTTCAACGAGCCTA GAAATCACTTGGCTTCATTTTTTCCATTTGGGCTAGGTCCTAGAATCTGTGTTGGTAAAAATTTAGCCATTATGGAAGCAAAAGTTGCTCTGGCCATGAT ATTAAGGCATTACTCTTTCGTAGTGTCCGCCACCTACCTTCATGCTCCAAGACTCCTGATAAGCATGCAGCCTCAGTATGGTGCGCAACTCCTCCTCCGC CGGATTACAAGTTAA
AA sequence Show only first row Show all	>Potri.014G043100.1 pacid=42763397 polypeptide=Potri.014G043100.1.p locus=Potri.014G043100 ID=Potri.014G043100.1.v4.1 annot-version=v4.1 MHLVCLVYVLLPVCVLRLIHSMIWVPWRIHVHFRKQGISGPNYRPIFGNTEEYRNSFTEARKKTMPFNHNIVHRVTPFYHEWSRKYGKTFLYWFGVIPIL ATADLDMIKDIFMNTGGGSFEKVRLNPQAKLLFGQGLNGLVGEEWALHRRIANQAFMMERIKCWGLDIMASTMKMLTKWEEIRGERDEFEMDVHRELQDL ASDVISKTAFGSNYEEGKRVFSLQDKQKHLVFDAIGNVYIPGFRFLPTKKNRERWRIERETRAAIRNLIKTNSKARENSRNLLSLLMSSYKNQDGKEEKL GVEEIINECKAFYFAGKESMADLLTWALLLLAQHQEWQDKAREEVLSVCRGNEVLLSENVNDLKIVNLIIHETLRLYPPAVMLMRQTTKNVKLGTLDVPA GTQFFLALPSIHHDTDIWGKDANEFNPLRFNEPRNHLASFFPFGLGPRICVGKNLAIMEAKVALAMILRHYSFVVSATYLHAPRLLISMQPQYGAQLLLR RITS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.014G043100 [exp]	0	1
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G155600 [exp]	1.00	0.9112	CYP716C1
					Potri.003G060366 [exp]	1.41	0.8750
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G136501 [exp]	4.00	0.8422
AT2G38800			Plant calmodulin-binding prote...		Potri.003G201400 [exp]	5.19	0.8510
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G137000 [exp]	5.29	0.8126
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Potri.004G167500 [exp]	7.74	0.7867
AT1G35560	TCP	TCP23	TCP family transcription facto...		Potri.013G110700 [exp]	10.00	0.8006
AT1G78060			Glycosyl hydrolase family prot...		Potri.005G168400 [exp]	10.00	0.8374
AT1G13970			Protein of unknown function (D...		Potri.010G163100 [exp]	10.95	0.8117
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.008G187700 [exp]	13.85	0.8215

Compare expression of checked genes

Potri.014G043100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.