Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60200 91 / 7e-21 unknown protein AT2G44600 91 / 8e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G135400 [exp] 296 / 2e-99 AT2G44600 168 / 1e-49 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019505 [exp] 131 / 1e-35 AT2G44600 160 / 6e-47 unknown protein Lus10043351 [exp] 125 / 3e-33 AT2G44600 159 / 1e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G043800.2 pacid=42763968 polypeptide=Potri.014G043800.2.p locus=Potri.014G043800 ID=Potri.014G043800.2.v4.1 annot-version=v4.1 ATGAGGTGCAATAAACACCCGTGCGACCTCAGCTGCAGCGTGGGCGTATGCGCTTCTTGCCTCCGAGAACGCTTGTCTGCATTAATCGCCGCCCAGGTTC AAATACAGCAGCAGCAGCAGATAGCACAATTAGCAAAGGCACATCATAACCCACGCGCCGCCACAGTAATAGACGAAAGCCGTAAATCAGATTCTAATTC TCAACATCATCAACAACAACAACAACAACCTCCTCCTCTGATATTTCCCCTCTCTGTTTCTCCTTACGTTTCTCGCCGTAAATCTGACGACCACTCCTCC TGGTACGCCCACAACCAACACCACAACCTCCGTTTCTACAGCACTCCTCAGGTGGGCCCTACCTACACCACCACAACAACCGCAGCGTATAAGAAGCGAA ACAAAAAGTTCTCGCTTTTCTCCAGTCTATTCAGGTCCAGATCCGACAAGTTCAGTACACACTCTACTAGCTATCGTGATTCCATAGAAGCATCATCGTC TTCTTCCCCTTCTTGGTTATCAACAATCTTCTCCGGTCGTCGGAGAAAGCAATCAACGCAATTATCCATGGGATACTCCGGCTCGGTTAGTGGAAAGCCT CGACAGAGGTTAGATCGAGGAATGTCGCCAGCGAGAGGCTCGGATTCTGAAGAGGATTGTGAGAATTGCGATCGGTCACCTTCAGGGAGCGGCTTCTCGC CGGAGTCTTCGCCAGGGTGGAAGAAGACACCAGTCTCTCAGGCTTCCATGCGGCGAGGGAAGGCGGGACACACTAGGAACGTGTCTGGATTGACGTTTTG CTTGAGTCCTCTTGTGAGGGCGAGTCCTAACCGGAATTGGAGCCAGAAGGGAGGATTGCCGCCTGAATTGGGACTTTCTGGTGAGACTAGGGCACCGGTA AAGCCGCATCTGTCTACTGCGGCCTCGTTTTGCGCGAACCGGTCGAGGAAGCTTGCCGATTTTGGAAGAGTCAATCACAACCGTTAA
AA sequence Show only first row Show all	>Potri.014G043800.2 pacid=42763968 polypeptide=Potri.014G043800.2.p locus=Potri.014G043800 ID=Potri.014G043800.2.v4.1 annot-version=v4.1 MRCNKHPCDLSCSVGVCASCLRERLSALIAAQVQIQQQQQIAQLAKAHHNPRAATVIDESRKSDSNSQHHQQQQQQPPPLIFPLSVSPYVSRRKSDDHSS WYAHNQHHNLRFYSTPQVGPTYTTTTTAAYKKRNKKFSLFSSLFRSRSDKFSTHSTSYRDSIEASSSSSPSWLSTIFSGRRRKQSTQLSMGYSGSVSGKP RQRLDRGMSPARGSDSEEDCENCDRSPSGSGFSPESSPGWKKTPVSQASMRRGKAGHTRNVSGLTFCLSPLVRASPNRNWSQKGGLPPELGLSGETRAPV KPHLSTAASFCANRSRKLADFGRVNHNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60200			unknown protein		Potri.014G043800 [exp]	0	1
AT1G76270			O-fucosyltransferase family pr...		Potri.009G143100 [exp]	1.41	0.7809
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.009G014500 [exp]	2.23	0.7837	Pt-HB1.8
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.002G123500 [exp]	3.00	0.7751
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Potri.008G158800 [exp]	6.92	0.7302	AGO906,Pt-AGO1.2
AT1G23050			hydroxyproline-rich glycoprote...		Potri.008G129200 [exp]	13.41	0.6609
AT5G65170			VQ motif-containing protein (....		Potri.005G166100 [exp]	14.49	0.7099
AT3G08670			unknown protein		Potri.016G139500 [exp]	15.16	0.7492
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.010G130400 [exp]	15.49	0.7470	CLE12.1
AT1G79620			Leucine-rich repeat protein ki...		Potri.016G144100 [exp]	25.61	0.7741
AT3G23290		LSH4	LIGHT SENSITIVE HYPOCOTYLS 4, ...		Potri.008G167700 [exp]	25.92	0.6059

Compare expression of checked genes

Potri.014G043800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.