Plant FIBer expression Database

Potri.014G044200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44640 446 / 3e-154 unknown protein
AT3G06960 226 / 1e-68 TGD4, PDE320 TRIGALACTOSYLDIACYLGLYCEROL 4, pigment defective 320 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G002800
[exp]
241 / 3e-74 AT3G06960 521 / 0.0 TRIGALACTOSYLDIACYLGLYCEROL 4, pigment defective 320 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043347
[exp]
488 / 2e-170 AT2G44640 447 / 7e-155 unknown protein
Lus10019499
[exp]
479 / 5e-167 AT2G44640 451 / 5e-156 unknown protein
Lus10022978
[exp]
221 / 2e-66 AT3G06960 530 / 0.0 TRIGALACTOSYLDIACYLGLYCEROL 4, pigment defective 320 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12600 DUF3769 Protein of unknown function (DUF3769)
Representative CDS sequence
>Potri.014G044200.1 pacid=42762679 polypeptide=Potri.014G044200.1.p locus=Potri.014G044200 ID=Potri.014G044200.1.v4.1 annot-version=v4.1
ATGGCTAACTTGAGGACGGCTATGGACTCACAATTCTGGGACCAACCCATTTCTTCCTCACAAACCCTAGAAGGTTGTGCTTACTCCATTCCTGGAGACC
CATTTCCTCTTGAAGTCACCAGAGCCAGCAAAGCCCTTAGAGTTCAACAACTCTCTGTTTTAGGAAATGGCTTCCCTCTTGGCACCATTCCCTCTTTCTC
TCCTACTTCGACCAAGGACCTTGGCGCTTTTTCTCTCCAGTCTCTCTTCCTCAAACTCGCCACCTCTAACAGTTGGCTAGGATTAATTGGCCAATTTAGA
CCAAAGAAGCTGATTTCTTCTATTAAAGGAGAATTTACTAATGCTGATGAATTTGAATGGCCTGCATTTAAAGATGTAGCTAAGCATGTTTTTGACAAGT
CGATTTATTCCCTTGGTTTATTCTCACAAATCTCCTTGTCTTCATCTTCTGTGTTGCTAAGCACAGAAAGGCATGGTGACAAGAGGAGACCACGCTACAA
GATGATGCTCTGGCATGAGCTTCCTGATCATGATATAACTTTGGAGGCTGCGTGGCCTGGGCTATTTCTTGACCACAAAGGGAAATACTGGGATGTTCCT
GAGTCAATATCCTTGGATATGTCATCCCTTCCCTCTGAATCTGGGTTCCAATACCGCATTGGTGTACACAAAAACGGCGGTCATCCTCAGCCTGTTAACA
CCTTAAATGGTGAGGTACCCTGTGCTTTGATGCCTGGATTATGTGCGAAGGCTGCCTTTTCTTATGAAAAGAGAAAGGATTTTTGGAGGCAAAAAGACAA
AGTTGATGATACTGCGGTGAAGACAGATAAGGGAAAGGTTTGGCACCCGTCATTTGATATGCGCCTTAGGGAACCTCATTCTGCAATATCTGGGATTATT
GGTGGCACCTCTGTGGCCTGGTTTGGGGGCAGTGAAAGCTCCCCATCTACAGAATCGCATGTTGATATGGACACTTCAATTGGCACAAAGAAGAGAAGTC
CATTAAATGCCAATCTGTTTGGCTCAGTTTGCTATACTTTTCAGCACGGGAGGTTCACTAAGCTATATGGTGATCTAACTAGGGTAGATGCTCGCCTGGA
TATCTGTTCAGCTTCTGCAGTTGCTAAAAGGGTTTTCAATATTTTCAGACGTTCTTCCTTTAGTAATGCAGACAATCCACTGTCTTCTCCAAAGCTTAGT
CTGATCCTCCAACAGCAGGTTGCAGGTCCAATTATGGTTCGGGTTGATTCAAAGTTTTCACTTGGTTCTTCCTCTGGGAAACAAGGCCCGCATGTCGAGG
ATCTCATATGCAGCTTGAGTTACTCATTGAGGCTTTTACGCTCTGGGAAGGTTGTTGCTTGGTATTCTCCAAAAAGAAAAGAGGGGATGGTTGAGTTGCG
CTTGTTTGAGTTTTAA
AA sequence
>Potri.014G044200.1 pacid=42762679 polypeptide=Potri.014G044200.1.p locus=Potri.014G044200 ID=Potri.014G044200.1.v4.1 annot-version=v4.1
MANLRTAMDSQFWDQPISSSQTLEGCAYSIPGDPFPLEVTRASKALRVQQLSVLGNGFPLGTIPSFSPTSTKDLGAFSLQSLFLKLATSNSWLGLIGQFR
PKKLISSIKGEFTNADEFEWPAFKDVAKHVFDKSIYSLGLFSQISLSSSSVLLSTERHGDKRRPRYKMMLWHELPDHDITLEAAWPGLFLDHKGKYWDVP
ESISLDMSSLPSESGFQYRIGVHKNGGHPQPVNTLNGEVPCALMPGLCAKAAFSYEKRKDFWRQKDKVDDTAVKTDKGKVWHPSFDMRLREPHSAISGII
GGTSVAWFGGSESSPSTESHVDMDTSIGTKKRSPLNANLFGSVCYTFQHGRFTKLYGDLTRVDARLDICSASAVAKRVFNIFRRSSFSNADNPLSSPKLS
LILQQQVAGPIMVRVDSKFSLGSSSGKQGPHVEDLICSLSYSLRLLRSGKVVAWYSPKRKEGMVELRLFEF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G44640 unknown protein Potri.014G044200
[exp]
0 1
AT3G20330 PYRB PYRIMIDINE B (.1) Potri.001G357200
[exp]
1.00 0.9370
AT1G02560 NCLPP5, NCLPP1,... NUCLEAR CLPP 5, NUCLEAR-ENCODE... Potri.002G195200
[exp]
6.00 0.9226 CLPP5.2
AT1G10522 unknown protein Potri.010G094900
[exp]
9.59 0.9317
AT4G22930 PYR4, DHOASE DIHYDROOROTASE, pyrimidin 4 (.... Potri.007G139700
[exp]
9.79 0.8636
AT5G63310 NDPK1A, NDPKIAI... NDP KINASE 1A, NUCLEOSIDE DIPH... Potri.012G093800
[exp]
10.39 0.9208
AT5G08400 Protein of unknown function (D... Potri.010G255300
[exp]
12.68 0.9167
AT3G27740 VEN6, CARA VENOSA 6, carbamoyl phosphate ... Potri.003G080900
[exp]
14.31 0.8883 Pt-CARA.2
AT4G28210 EMB1923 embryo defective 1923 (.1) Potri.013G146900
[exp]
18.57 0.9178
AT4G33760 tRNA synthetase class II (D, K... Potri.009G084300
[exp]
21.63 0.9098
AT5G24020 ARC11, ATMIND1,... ACCUMULATION AND REPLICATION O... Potri.004G080100
[exp]
22.58 0.9053 Pt-MIND.1

Potri.014G044200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.