Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60410 105 / 5e-26 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) AT4G17440 55 / 1e-08 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT3G18295 53 / 5e-08 Protein of unknown function (DUF1639) (.1) AT1G25370 53 / 8e-08 Protein of unknown function (DUF1639) (.1) AT1G48770 43 / 7e-05 Protein of unknown function (DUF1639) (.1) AT4G20300 43 / 0.0002 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G136200 [exp] 238 / 1e-77 AT3G60410 109 / 6e-28 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Potri.012G055200 [exp] 63 / 1e-11 AT3G18295 109 / 3e-29 Protein of unknown function (DUF1639) (.1) Potri.010G122700 [exp] 63 / 3e-11 AT1G25370 110 / 1e-28 Protein of unknown function (DUF1639) (.1) Potri.008G122600 [exp] 60 / 4e-10 AT1G25370 100 / 6e-25 Protein of unknown function (DUF1639) (.1) Potri.001G073400 [exp] 44 / 6e-05 AT4G20300 226 / 3e-71 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.003G157500 [exp] 44 / 6e-05 AT4G20300 201 / 2e-61 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.014G044700 [exp] 42 / 0.0001 ND / Potri.006G233100 [exp] 42 / 0.0004 AT1G55340 130 / 9e-37 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.018G059200 [exp] 41 / 0.0008 AT1G55340 133 / 3e-38 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010984 [exp] 61 / 2e-10 AT3G60410 89 / 3e-20 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Lus10004378 [exp] 58 / 3e-09 AT4G17440 96 / 4e-23 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10038942 [exp] 50 / 3e-08 AT1G25370 72 / 7e-17 Protein of unknown function (DUF1639) (.1) Lus10027232 [exp] 49 / 4e-07 AT1G68340 75 / 3e-17 Protein of unknown function (DUF1639) (.1) Lus10035144 [exp] 47 / 4e-06 AT1G25370 87 / 2e-20 Protein of unknown function (DUF1639) (.1) Lus10040176 [exp] 41 / 0.0006 AT3G60410 76 / 1e-16 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07797 [poplar] [flax] DUF1639 Protein of unknown function (DUF1639)
Representative CDS sequence Show only first row Show all	>Potri.014G044800.1 pacid=42764101 polypeptide=Potri.014G044800.1.p locus=Potri.014G044800 ID=Potri.014G044800.1.v4.1 annot-version=v4.1 ATGGTGTTTCGCACTGAACCGGAAACTGAGCCAAACACAAACAACAACACTATCATGGCTTCTTCTACTACTACTACTAGTACTGTGAAACCACACCAGC CACTCCATAACTTCCCTTTGCAAGACCTAAAATGGTCAATGAACCATTCCAATAACGTTACCAACCACCACCACCGCTTTCGCACTCACAAATCTCCTCA CCGCGATGCTGCTTCTGCGGCGGATTCGGAGGGAGACGGCGGGGTCAAGATTGATAAACTATTGAAGAAAAAATCTGGTGATGTTGAGAATTCGGAGAGG AAATCGAAGATCTTTATTCGGTTGAGGACTAACAAAAACAGCAGCGGAAGCGGAAGCAGCAGCGGAAGCAGCAAGGGCGTGGTTGGTGATGTTGCTGCGG GTGCAGTGGATCAGGGCTCTGCTGCTGTAGTGGAGGACGTGGAGGAACTGATGCCGAAGACGTGGAATCTGAGGCCGAGGAGAGCTGTTAATAATATTAA TAATGATAGTAATAATAATAATAACAAGGGTTTGAATGGGAATGGAGGTGCTTTGAAGATTTGTGGGGGTGCGGTGCCGGAGATCAAACCTCAGGTGCCG GGTGGTAACCGGACTGAATTGACTCGGTCCAACCGGAATGGTAATGACGCTAATAATTATGATAATGATAATGACAATAATAATAATAACAGGAAGGAGA GGGGGAAGGAAAAGGAAAAGGAGAAGAAGGTGAGGTTTTCGATTCCTCTTACGAAAGTGGAAATTGAAGAGGATATTTATTCCTTGACTGGGTCAAAGCC GGCGAGAAGGCCTAAGAAGAGAGCAAAGCATGTGCAGAAACAACTTGATTGCCTGTTTCCTGGTATGTGGCTGGATTCGATCACCCCGGATTGCTATAAG GTTCATGAAGCTCCTTCGAAGTTGAGAATGTAG
AA sequence Show only first row Show all	>Potri.014G044800.1 pacid=42764101 polypeptide=Potri.014G044800.1.p locus=Potri.014G044800 ID=Potri.014G044800.1.v4.1 annot-version=v4.1 MVFRTEPETEPNTNNNTIMASSTTTTSTVKPHQPLHNFPLQDLKWSMNHSNNVTNHHHRFRTHKSPHRDAASAADSEGDGGVKIDKLLKKKSGDVENSER KSKIFIRLRTNKNSSGSGSSSGSSKGVVGDVAAGAVDQGSAAVVEDVEELMPKTWNLRPRRAVNNINNDSNNNNNKGLNGNGGALKICGGAVPEIKPQVP GGNRTELTRSNRNGNDANNYDNDNDNNNNNRKERGKEKEKEKKVRFSIPLTKVEIEEDIYSLTGSKPARRPKKRAKHVQKQLDCLFPGMWLDSITPDCYK VHEAPSKLRM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60410			Protein of unknown function (D...		Potri.014G044800 [exp]	0	1
AT2G36740		ATSWC2	sequence-specific DNA binding ...		Potri.001G412800 [exp]	1.41	0.7675
AT5G23710			DNA binding;DNA-directed RNA p...		Potri.003G033600 [exp]	7.74	0.6939
AT3G22270			Topoisomerase II-associated pr...		Potri.016G020100 [exp]	8.66	0.7239
AT4G32870			Polyketide cyclase/dehydrase a...		Potri.006G237000 [exp]	15.62	0.6165
AT5G22080			Chaperone DnaJ-domain superfam...		Potri.001G215800 [exp]	19.49	0.7432
AT1G61690			phosphoinositide binding (.1)		Potri.011G032200 [exp]	21.81	0.6171
AT5G16420			Pentatricopeptide repeat (PPR-...		Potri.012G031600 [exp]	22.13	0.7177
AT2G24960			unknown protein		Potri.002G023800 [exp]	28.84	0.6223
					Potri.017G151740 [exp]	31.14	0.6255
AT3G14830			unknown protein		Potri.003G026500 [exp]	34.20	0.6729

Compare expression of checked genes

Potri.014G044800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.