Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60400 597 / 0 Mitochondrial transcription termination factor family protein (.1) AT4G19650 164 / 5e-44 Mitochondrial transcription termination factor family protein (.1) AT5G06810 155 / 6e-40 Mitochondrial transcription termination factor family protein (.1) AT5G45113 97 / 1e-21 mitochondrial transcription termination factor-related / mTERF-related (.1) AT5G54180 57 / 2e-08 PTAC15 plastid transcriptionally active 15 (.1) AT4G02990 53 / 3e-07 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT1G74120 49 / 7e-06 Mitochondrial transcription termination factor family protein (.1) AT5G55580 47 / 3e-05 Mitochondrial transcription termination factor family protein (.1) AT2G34620 44 / 0.0003 Mitochondrial transcription termination factor family protein (.1) AT2G36000 42 / 0.0009 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G118200 [exp] 182 / 4e-50 AT4G19650 549 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.016G048200 [exp] 174 / 2e-47 AT5G06810 501 / 3e-165 Mitochondrial transcription termination factor family protein (.1) Potri.016G048300 [exp] 171 / 3e-46 AT5G06810 485 / 2e-159 Mitochondrial transcription termination factor family protein (.1) Potri.016G048400 [exp] 158 / 8e-42 AT5G06810 483 / 9e-159 Mitochondrial transcription termination factor family protein (.1) Potri.015G115701 [exp] 71 / 1e-14 AT4G19650 139 / 2e-39 Mitochondrial transcription termination factor family protein (.1) Potri.015G005200 [exp] 65 / 7e-11 AT5G54180 493 / 3e-171 plastid transcriptionally active 15 (.1) Potri.009G116200 [exp] 64 / 2e-10 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.016G072200 [exp] 61 / 9e-10 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.001G361800 [exp] 57 / 3e-08 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013142 [exp] 636 / 0 AT3G60400 559 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10038336 [exp] 166 / 1e-44 AT4G19650 475 / 2e-162 Mitochondrial transcription termination factor family protein (.1) Lus10039774 [exp] 154 / 1e-40 AT5G06810 398 / 5e-127 Mitochondrial transcription termination factor family protein (.1) Lus10012021 [exp] 147 / 1e-37 AT5G06810 437 / 5e-141 Mitochondrial transcription termination factor family protein (.1) Lus10018548 [exp] 87 / 8e-18 AT5G06810 271 / 5e-81 Mitochondrial transcription termination factor family protein (.1) Lus10042322 [exp] 67 / 2e-11 AT2G21710 720 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Lus10021297 [exp] 57 / 1e-08 AT2G36000 264 / 8e-87 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10016971 [exp] 57 / 2e-08 AT2G36000 271 / 2e-89 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10026612 [exp] 56 / 4e-08 AT2G03050 285 / 4e-96 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Lus10030451 [exp] 55 / 7e-08 AT2G03050 283 / 3e-95 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.014G044900.5 pacid=42762519 polypeptide=Potri.014G044900.5.p locus=Potri.014G044900 ID=Potri.014G044900.5.v4.1 annot-version=v4.1 ATGTGGAAGATGCCAATACCAATTTCAATCTATACAACATTTTGCCGCCATTTTAGCAGCTCTCTACCAAAACGTCCAATATTTACGAGTGTGCCATGGA AGTACAAGAATCAAGCAATCAAACTAGCCCAGCAAGCTTTAACAGATTATCTACACTCAACAAGGTCACTACCATACAGTTATGCAGATCAAATAAGCAA GAATTCTCTTGTTTCTCTCTCAAATCTCGTCTCCAACATTCATTTCACTTCACCAACATTCGCTACTTCACTTCAGAAATATCTCAGGTACCATCCCATT AATGAATTAGAGTTTTTTTATGAAAGTATTGGAATTGATTATGATGAGGTTAGTGGGTTTTTGTCTAATGACAAGTTTTTTATTTCTGAAGAGGGGAGTG CTATAAATGTTTCTTGTGTGCTTTGTGATTTTGGGTTTCCCTGGAATAAGTTGGGGATGTTGTATAAAGAGGAGAAACGTGTTTTCAGTATGAGTGAAGA GGAGGTGAAGTCCAGGCTTTGTGGGCTTAAGGGTTTTAGGTTTAGCACTACGTCGGTGATTGGTATTTCCTTGGCGTTTCCTTTTGTGTTGAGAGGTGAA TTGAGTGGCGAGATTGGTGCTTTGTTTGATGATCTGAAAAGGGTTTTTGTGGATTTTGATTTGGAGAGTTGTGTTGAAGGAAATGTGGATGCTTGGTATG AGGTTTGTAGGAAAATTCGGGTGTTTTATGATTTGGGTTGTGAGAAAGGGAAAGTAGGGGAGTTGATGGGGAAGAGTAAAAGAATTTTTGTTGATTACCC AGTAGAGGTTTTGGTTCAAAAGGCGGAGTTTTTTTGTAAATTTGGTGTTAGAAAGGAGGATGTTGGTTTGTTATTACTAACGAAGCCAGGAATTTTGGAT TTTCAGTTGGAAGGGCAGGTGATTTCAGTTAAGGGGTTGTTGAAGCATTTTGGGTTGAGTGCTGAAGAATTGAAATCTGTTGCTCAAAATTATGGCCATG TGTTTGGCAGAAATAAAATGGCCAATTTGCCTCATGTGATGAGAGCTATGGAGTTACATGAATGGTTTTTCAATAAAATTAAGGATGGAAATCATCAGTT GCTTGCTAGTTATGTCATGAGTGATCCTGATGAAGATTTGGATGAAAAATATAGAGATAGCTTGGAAAGGATCCAATGTACAAGAACGCCCATGCATACA ATGAATAAGTTGGAGTTCTTGCATGCAATCGGGTTTGGAGAGAATGCTTTAACTATTAAGGTATTAACTGACTTGCATGGTACTAGTAGTGAATTACAAG AACGAGTTGATTGCCTTCTTCGTTATGGGATTGTATTCTCGAAGCTTTGCTCAATGATTAGAATGATGCCAAAGATCCTTAGCCAAAAACCTGAGATACT GCAGCAGAAATTAAACTACCTTTGTGAGGACATGAAATCCTCCTTGCAGTACCTTGATATTTTTCCTTCATTTTTGTGTTTTAACCTGGAGAATCGGATT AAACCAAGACATAGATTTCATATGTGGCTCACAGAAAGGGGTTTCTGTAAGCAGGAGTACTCCATTGCAAGCATTGTTGCAACCAGTGACAAGAGTTTTG TAGCTCGCTTACATGTAATTCACCCAGATGCTCCAAAACTTTGGGTTGATTTTTCTCATTCAAAAGCCCACTGA
AA sequence Show only first row Show all	>Potri.014G044900.5 pacid=42762519 polypeptide=Potri.014G044900.5.p locus=Potri.014G044900 ID=Potri.014G044900.5.v4.1 annot-version=v4.1 MWKMPIPISIYTTFCRHFSSSLPKRPIFTSVPWKYKNQAIKLAQQALTDYLHSTRSLPYSYADQISKNSLVSLSNLVSNIHFTSPTFATSLQKYLRYHPI NELEFFYESIGIDYDEVSGFLSNDKFFISEEGSAINVSCVLCDFGFPWNKLGMLYKEEKRVFSMSEEEVKSRLCGLKGFRFSTTSVIGISLAFPFVLRGE LSGEIGALFDDLKRVFVDFDLESCVEGNVDAWYEVCRKIRVFYDLGCEKGKVGELMGKSKRIFVDYPVEVLVQKAEFFCKFGVRKEDVGLLLLTKPGILD FQLEGQVISVKGLLKHFGLSAEELKSVAQNYGHVFGRNKMANLPHVMRAMELHEWFFNKIKDGNHQLLASYVMSDPDEDLDEKYRDSLERIQCTRTPMHT MNKLEFLHAIGFGENALTIKVLTDLHGTSSELQERVDCLLRYGIVFSKLCSMIRMMPKILSQKPEILQQKLNYLCEDMKSSLQYLDIFPSFLCFNLENRI KPRHRFHMWLTERGFCKQEYSIASIVATSDKSFVARLHVIHPDAPKLWVDFSHSKAH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60400			Mitochondrial transcription te...		Potri.014G044900 [exp]	0	1
AT5G64420			DNA polymerase V family (.1)		Potri.001G285600 [exp]	1.73	0.8452
AT1G13030			sphere organelles protein-rela...		Potri.008G185100 [exp]	2.23	0.8420
AT2G29200		APUM1	pumilio 1 (.1)		Potri.010G201100 [exp]	2.23	0.8704
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Potri.007G004900 [exp]	3.46	0.8434
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.014G121601 [exp]	4.89	0.8409
AT5G01110			Tetratricopeptide repeat (TPR)...		Potri.014G052800 [exp]	5.09	0.8623
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.009G093000 [exp]	5.47	0.8230
AT5G46070			Guanylate-binding family prote...		Potri.004G049400 [exp]	6.70	0.7766
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.014G121701 [exp]	9.53	0.8123
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Potri.015G089000 [exp]	13.26	0.8085

Compare expression of checked genes

Potri.014G044900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.