Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15270 106 / 2e-25 RNA-binding KH domain-containing protein (.1.2) AT1G51580 93 / 1e-20 RNA-binding KH domain-containing protein (.1) AT3G04610 93 / 1e-20 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT4G26000 92 / 3e-20 PEP PEPPER, RNA-binding KH domain-containing protein (.1) AT5G64390 84 / 1e-17 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT1G14170 84 / 1e-17 RNA-binding KH domain-containing protein (.1.2.3) AT4G18375 74 / 2e-14 RNA-binding KH domain-containing protein (.1.2) AT5G09560 72 / 8e-14 RNA-binding KH domain-containing protein (.1) AT5G46190 66 / 2e-11 RNA-binding KH domain-containing protein (.1) AT2G22600 64 / 7e-11 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G123400 [exp] 102 / 5e-24 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 100 / 5e-23 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.013G043000 [exp] 94 / 5e-21 AT3G04610 520 / 1e-180 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Potri.005G056100 [exp] 94 / 7e-21 AT3G04610 566 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Potri.008G088600 [exp] 88 / 5e-19 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 86 / 3e-18 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.010G251700 [exp] 86 / 5e-18 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.006G277200 [exp] 85 / 5e-18 AT4G26000 427 / 2e-146 PEPPER, RNA-binding KH domain-containing protein (.1) Potri.010G167100 [exp] 85 / 7e-18 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033557 [exp] 101 / 5e-24 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2) Lus10005530 [exp] 102 / 1e-23 AT3G04610 593 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Lus10006565 [exp] 101 / 1e-23 AT3G04610 596 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Lus10030689 [exp] 96 / 9e-22 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 94 / 5e-21 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10017596 [exp] 91 / 3e-20 AT5G15270 169 / 2e-47 RNA-binding KH domain-containing protein (.1.2) Lus10026963 [exp] 89 / 1e-19 AT4G26000 393 / 6e-134 PEPPER, RNA-binding KH domain-containing protein (.1) Lus10020163 [exp] 90 / 2e-19 AT4G26000 414 / 3e-141 PEPPER, RNA-binding KH domain-containing protein (.1) Lus10028237 [exp] 83 / 4e-17 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10007236 [exp] 80 / 5e-16 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.014G045000.5 pacid=42763916 polypeptide=Potri.014G045000.5.p locus=Potri.014G045000 ID=Potri.014G045000.5.v4.1 annot-version=v4.1 ATGGCGCAACCATGGGAATTACAGTTAAATCCCTCGCCGCCAGGCACTGAATTGCCTAAGTTAAACGCCCTCCCGGTGACAGCCAAGCGCCGGCGTGACG ATTTTGACGGTGGTGAAACATCCGCCGCAAAACGGCAAGCTAGAGCAGATGTTATATTCAGGATCGTGGTCCCGTCGGGAAAGATCGGAAAAGTAATCGG CAAACAAGGCCATCGTATCCAGAAGATTCGAGAAGATACCAAAGCCACGATCAAAATCGCCGACGCCGTCGCCAGACATGAAGAGCGTGTGATAATTATA AGCTCGAAGGAAAATGAGAATGGGGCAACTGACGCGGAGAATGCGTTGCAGCGAATAGCAGAGTTGATTTTGAATGAAGATGATGGAGGTAGCAGTGCCG GCGGCGGCGTGGAGATAGGGAAACTAGTCAATGCAGGGCATGTGGCTGCAAATACGATAAGATTATTAATAGCTGGGTCTCAAGCTGGTTCTTTGATAGG AATGTCTGGTCAAAATATAGTGAAATTGAGGAACTCATCAGGTGCAATGATCACTGTTCTTGCGCCGAATCAGTTGCCTCTCTGTGCTTCTGCTTATGAA TCTGATCGTGTTGTGCAGATATCAGGAGATGTACCTGTAGTGCTAAAAGCTCTGGAGGAGATTGGTTGTCAACTCAGGGAGAACCCACCTAAACAAGTAA TTTCTATCAGTCCATCGTACAACTATAGCGCAGTTCCATTTCAACAATATGCGCCCCAAGCTGCAGCTGATTATGTAACCATGGAGATGATGGTCCCGGA GACAATGATGGGTGGCTTGATAGGAAGAAGTGGTTCTAATATATCAAGGATCAGAGTGGAGTCTGGAGCAGTAATCAAGGTTCATGGTGGGAAAGGTGCG CAAAAACATAGGCATATACAACTAGCTGGTAGTTCTCAGCAGGTGGCGCTAGCAAAACAGAGGGTAGATGAATACATATATTCTCAGTTGGTTCAACAAG CTGGCACTCAACAGTTGCAGATATGA
AA sequence Show only first row Show all	>Potri.014G045000.5 pacid=42763916 polypeptide=Potri.014G045000.5.p locus=Potri.014G045000 ID=Potri.014G045000.5.v4.1 annot-version=v4.1 MAQPWELQLNPSPPGTELPKLNALPVTAKRRRDDFDGGETSAAKRQARADVIFRIVVPSGKIGKVIGKQGHRIQKIREDTKATIKIADAVARHEERVIII SSKENENGATDAENALQRIAELILNEDDGGSSAGGGVEIGKLVNAGHVAANTIRLLIAGSQAGSLIGMSGQNIVKLRNSSGAMITVLAPNQLPLCASAYE SDRVVQISGDVPVVLKALEEIGCQLRENPPKQVISISPSYNYSAVPFQQYAPQAAADYVTMEMMVPETMMGGLIGRSGSNISRIRVESGAVIKVHGGKGA QKHRHIQLAGSSQQVALAKQRVDEYIYSQLVQQAGTQQLQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15270			RNA-binding KH domain-containi...		Potri.014G045000 [exp]	0	1
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Potri.001G320201 [exp]	1.41	0.7871
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Potri.010G162500 [exp]	6.63	0.7216
AT5G64010			unknown protein		Potri.005G064800 [exp]	9.79	0.6839
AT5G58190		ECT10	evolutionarily conserved C-ter...		Potri.018G149800 [exp]	12.96	0.7119
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Potri.008G085400 [exp]	13.63	0.6602
AT3G07300			NagB/RpiA/CoA transferase-like...		Potri.001G026100 [exp]	14.38	0.7277
AT2G19260			RING/FYVE/PHD zinc finger supe...		Potri.018G142300 [exp]	18.33	0.6954
AT4G32190			Myosin heavy chain-related pro...		Potri.006G255800 [exp]	19.05	0.6966
AT5G05450			P-loop containing nucleoside t...		Potri.008G073100 [exp]	25.09	0.6873
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.003G110300 [exp]	30.88	0.7179

Compare expression of checked genes

Potri.014G045000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.