Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60380 90 / 3e-18 unknown protein AT4G16790 52 / 1e-06 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G136600 [exp] 882 / 0 AT3G60380 86 / 5e-17 unknown protein Potri.003G079900 [exp] 70 / 4e-12 AT4G16790 114 / 8e-27 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G155000 [exp] 69 / 7e-12 AT4G16790 114 / 5e-27 hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028193 [exp] 256 / 1e-74 AT3G60380 112 / 2e-25 unknown protein Lus10042896 [exp] 229 / 8e-65 AT3G60380 91 / 1e-18 unknown protein Lus10004758 [exp] 46 / 9e-05 AT4G16790 72 / 5e-13 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [poplar] [flax] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Potri.014G045300.1 pacid=42762504 polypeptide=Potri.014G045300.1.p locus=Potri.014G045300 ID=Potri.014G045300.1.v4.1 annot-version=v4.1 ATGGCAGATCCAGTCTCATATTCCAAGCCCCATTTCCCACTCAAGGAGCTTCACAACTCTAAGCCCGTCACCAAAATCAATAAGTCGTCGTCGTCATCTT TCACTAGTCGCGTCCTCTGTAAGTCTCTCTTTTTCGTGCTCTTTCTTGTTCTTATTCCACTATTTCCTTCACAAGCTCCTGAATTTATCAGTCACTCTAC TATTCTCACCATATTCTGGGACCTTGCTCACCTTCTTTTCATTGGCCTAGCTGTATGTTATGGCTTTTTTAGTAGTAGAAATGTTGAAGATTTTGACTTT GAACCACCACCCCACTACTCCGATGATTCACAATCATCTTATGTCTCTAGAATTTTTCATTTTTCTCCAATTTTTGAGGATGGGTCCGAAAATTTATCTG GGTTTGATGACAAAAATGTGTACCAGAATTGGGACTCACAGTATTATAGAGGTGAGTCAATGGTTAATGATACCAATGGTCTTGAACTGAACAAAATTGG ACAACGGTACTACAGGGGTGAGTCTATGGTTGATGTTGCTAATGGTAATGAACGAAACGAGGGTGGATCTTCAGATGCTGAAAATGGCTTTGAAAATTCA TTTGAGAATGGTGACAGTAATGTGGTTCAATCTTGGAATTCCCAGTATTTCCAAGTTGAATCAACAGTTGTAGTGTCTCAACCAAACTATTCACTCGATG AATATGGTAATCTAGGACAAGCAAATGGTTACAGGCCACTAGGATTGCCAGTTAGGAGTTTAAATCCGAGGGTTAGGAATCTGGATAGTCCTCAATTTAG TAATGGAAGCGAGTCTGGTACAAGCTTCTCGGGCTCGGGCTCGGCTGATGGTTCTGGAAGGAGTGTAAAGGAGAATGATTTTGGTGATATGGGTCCTACG AACTTAGAGGGGATGCTTGATGAAACTGTAGCCTTACCTTCCCAAAGTCCATGGCGTCCGAGATTTGAGACAAGGGAAATTAGAGAGAAAGTGGGTTCTT CTTCTGGAGGTTATTCACATTTTAGGCCTCTCTCAGTGGATGAAACACAGTTCGAGTCTCTCAAATCGCAATCTTTCATATCCACAACATCTTTGTCATC TCAAGGGAATCCAGGTCCACAACATCTCGATCCTTCACATTTTAGACCTCTCTCAGTTGATGAAACTCAATTCGAGTCTCTCAAGTCGCAAGCTTTCAGA TCCACAACATCTTTGTCATCTCAAGGGAATCCAGGTCCACAACACCTGGGTCCTTCACATTTTAGACCTCTCTCAGCTGATGAAGCTCAATTCGAGTCTC TCAAGTCACAATCTTTCAGGTCCACAACATCGTTGTCATCCCAAGGGAGTTCAGCATCGTATTCACCAACGACGCTCTCGCCCTCACGTTCTGTTTCTTC TGAAATGCCTAACTCTGAAACCGAAGAATTAGGGGAAAACAAGAGTTACCGTGCTTCTTATCCTCCTACTTCTCAATCACCAACAACCAGGAAGGCTGAT GCTCCATTGAATGCATTTCATTTGAGGAGATATAGTAGTGGCTCTTTGTTCCAAAAGGATTCCCGGAGAAGCTTGAAGGATGAGTTGAAGGATTTGAAAG GGAAAAGAAATGAGGATACAATGGGGAGTAGAGAGGCGGGGCATGGTTCTTTGAGATCAGTTCAGAAACCTGCAACAAGAAATGAGGATACAATGGGTAG TACAGAGGCGGGGCAGGGTTCTTTGAGATCAGTTCAGAAACCTGCAACACCTGTTAAAATTTCATCACTAAAGGGAAAATCTGTTAGGACTATCAGAGCC AGCCGATATGCTGCAGAGACAATAAAAGCTGGAGAGATGAGTAGAAACCACATTGATGATAAGGTTGGAAAAATATGCAATGAAGCTCAGACAGTAAACA TGGGAAAGGATGAAATGGAGAGAGGACCTGATAATATGTTAATTGGCGCCGATAAAAAGAACTCTGATGCTCAGCATCACATGTCAAAGCCAACCCTTTC GAAGTATAAGAAGAAAGAAAATGAAGTAATTTCAGAGAGTGTTACTGTGGAGTCCACAGAAGACTCAGAAAGCGAGAATGATATCTCTCGAGTAAGTTCA GATGAAGATTCCGCTCCGGCCATCTACAATGACGCAGGAGACTACTCTAGTGAGGTTGATAAGAAAGCTGGTGAATTTATAGCCAAGTTCAGGGAGCAGA TCAGGCTTCAGAAAGTAGCATCTATTGAGAGATCAAAGGGCAAGCGCATGAATGGTACTTATGTTAGGTGA
AA sequence Show only first row Show all	>Potri.014G045300.1 pacid=42762504 polypeptide=Potri.014G045300.1.p locus=Potri.014G045300 ID=Potri.014G045300.1.v4.1 annot-version=v4.1 MADPVSYSKPHFPLKELHNSKPVTKINKSSSSSFTSRVLCKSLFFVLFLVLIPLFPSQAPEFISHSTILTIFWDLAHLLFIGLAVCYGFFSSRNVEDFDF EPPPHYSDDSQSSYVSRIFHFSPIFEDGSENLSGFDDKNVYQNWDSQYYRGESMVNDTNGLELNKIGQRYYRGESMVDVANGNERNEGGSSDAENGFENS FENGDSNVVQSWNSQYFQVESTVVVSQPNYSLDEYGNLGQANGYRPLGLPVRSLNPRVRNLDSPQFSNGSESGTSFSGSGSADGSGRSVKENDFGDMGPT NLEGMLDETVALPSQSPWRPRFETREIREKVGSSSGGYSHFRPLSVDETQFESLKSQSFISTTSLSSQGNPGPQHLDPSHFRPLSVDETQFESLKSQAFR STTSLSSQGNPGPQHLGPSHFRPLSADEAQFESLKSQSFRSTTSLSSQGSSASYSPTTLSPSRSVSSEMPNSETEELGENKSYRASYPPTSQSPTTRKAD APLNAFHLRRYSSGSLFQKDSRRSLKDELKDLKGKRNEDTMGSREAGHGSLRSVQKPATRNEDTMGSTEAGQGSLRSVQKPATPVKISSLKGKSVRTIRA SRYAAETIKAGEMSRNHIDDKVGKICNEAQTVNMGKDEMERGPDNMLIGADKKNSDAQHHMSKPTLSKYKKKENEVISESVTVESTEDSESENDISRVSS DEDSAPAIYNDAGDYSSEVDKKAGEFIAKFREQIRLQKVASIERSKGKRMNGTYVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60380			unknown protein		Potri.014G045300 [exp]	0	1
AT2G20650			RING/U-box superfamily protein...		Potri.017G012600 [exp]	4.00	0.9126
AT2G41770			Protein of unknown function (D...		Potri.016G055700 [exp]	4.89	0.9000
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Potri.015G135500 [exp]	5.00	0.8946
AT3G59690		IQD13	IQ-domain 13 (.1)		Potri.013G127200 [exp]	5.65	0.8986
AT1G33800			Protein of unknown function (D...		Potri.013G102200 [exp]	5.83	0.9057
AT4G03340			Core-2/I-branching beta-1,6-N-...		Potri.019G104600 [exp]	7.48	0.8652
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Potri.014G066200 [exp]	9.38	0.8447
AT2G04850			Auxin-responsive family protei...		Potri.014G161700 [exp]	11.22	0.8775
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Potri.006G062200 [exp]	12.36	0.8695
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Potri.011G153300 [exp]	13.07	0.8477

Compare expression of checked genes

Potri.014G045300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.