Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35680 360 / 2e-124 Phosphotyrosine protein phosphatases superfamily protein (.1) AT5G56610 274 / 3e-92 Phosphotyrosine protein phosphatases superfamily protein (.1.2) AT3G23610 60 / 2e-10 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT5G23720 47 / 2e-05 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) AT3G10940 42 / 0.0002 LSF2 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G136700 [exp] 565 / 0 AT2G35680 350 / 1e-120 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.003G080000 [exp] 385 / 2e-134 AT2G35680 385 / 3e-134 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.001G154700 [exp] 382 / 3e-133 AT2G35680 379 / 1e-131 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.010G033000 [exp] 56 / 3e-09 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.012G105800 [exp] 46 / 2e-05 AT5G23720 1006 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.015G105000 [exp] 45 / 8e-05 AT5G23720 1096 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004376 [exp] 364 / 3e-126 AT2G35680 367 / 3e-127 Phosphotyrosine protein phosphatases superfamily protein (.1) Lus10040174 [exp] 360 / 9e-125 AT2G35680 369 / 5e-128 Phosphotyrosine protein phosphatases superfamily protein (.1) Lus10012928 [exp] 315 / 2e-107 AT5G56610 294 / 5e-99 Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10034998 [exp] 249 / 5e-82 AT5G56610 247 / 1e-82 Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10021940 [exp] 62 / 2e-11 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10034033 [exp] 55 / 3e-09 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10041227 [exp] 50 / 6e-07 AT3G23610 237 / 4e-80 dual specificity protein phosphatase 1 (.1.2.3) Lus10043195 [exp] 47 / 2e-05 AT5G23720 1047 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10032545 [exp] 42 / 0.0005 AT5G23720 1120 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00782 [poplar] [flax] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.014G045500.1 pacid=42764079 polypeptide=Potri.014G045500.1.p locus=Potri.014G045500 ID=Potri.014G045500.1.v4.1 annot-version=v4.1 ATGTATATCGAAGAAATAAATGGAGGAGATCAAGATGACAATTCATGCAGAAAAGTTGTCGTTTTGGACGCGAAGAGAGTCTTGGTAGGTGCTGGAGCTC GTGCTCTCTTTTACCCTACACTGTTGTACAATGTTTTGAGAAATAAGATTCAGTCCGAGTTTCGTTGGTGGGATAGAGTCGATCAGTTTATATTGTTAGG AGCGGTTCCATTTCCGACAGATGTTCCACGATTGCAGGCATTAGGTGTGTCTGGAGTGGTTACATTGAATGAATCATACGAGACTTTGGTTCCTACATCA CTATATCATGCTCATGATATTGATCATTTGGTCATTCCGACAAGAGACTATCTGTTTGCTCCTTTGTTTAGTGATATATGCCAAGCTGTGGATTTCATAC ATGAAAATGCCTCTCTTGGGAAGACAACATATGTTCATTGCAAGGCTGGTAGGGGGCGCAGTACAACCATTGTTCTCTGTTACCTAGTGGAACACAGGCA CATGACGCCCAAATCTGCGTACGAGCATGTGAGATCTATTAGGCCTAGGGTACTTTTGGCCTCTTCTCAATGGCAGGCTGTTCAAGACTACTATCTTCTC AAGGTAAAAAAAATTACTATCCCTGGCTGTATGATAATTCAAAAAGCATTAGATCTTCCAACCAAAGAGGATGGAAAACAGGACACCGCAGCTTTTGATG ATGGATCTGCTGTGCTGGTAACAGAATCTGACCTTGATGGATATGATGCTACTTGTGCCTTGGGTGTTGTGGGTAATGACATGTTGAGAGAGCCAAGCCT GGCTTGCAAGGTTCAGTTTGCTAGTCAGGCTGCTATCTCCAGACTTTCATGCTTGTGGCTTGGGTACCAACCCGACCAGAAATCCTCAACAAAGAAACTC AGAAGCTCCATCAGGGCTAGTCAGTTGAGTAGCATTACTGTGGACATTCGGGTGTGTTGA
AA sequence Show only first row Show all	>Potri.014G045500.1 pacid=42764079 polypeptide=Potri.014G045500.1.p locus=Potri.014G045500 ID=Potri.014G045500.1.v4.1 annot-version=v4.1 MYIEEINGGDQDDNSCRKVVVLDAKRVLVGAGARALFYPTLLYNVLRNKIQSEFRWWDRVDQFILLGAVPFPTDVPRLQALGVSGVVTLNESYETLVPTS LYHAHDIDHLVIPTRDYLFAPLFSDICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLVEHRHMTPKSAYEHVRSIRPRVLLASSQWQAVQDYYLL KVKKITIPGCMIIQKALDLPTKEDGKQDTAAFDDGSAVLVTESDLDGYDATCALGVVGNDMLREPSLACKVQFASQAAISRLSCLWLGYQPDQKSSTKKL RSSIRASQLSSITVDIRVC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35680			Phosphotyrosine protein phosph...		Potri.014G045500 [exp]	0	1
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Potri.012G043900 [exp]	3.46	0.8600	NCPGS.6
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Potri.001G304800 [exp]	4.35	0.8607	CAM2
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Potri.001G267300 [exp]	5.29	0.8558
AT4G32330			TPX2 (targeting protein for Xk...		Potri.018G027500 [exp]	5.47	0.8555
AT4G22560			unknown protein		Potri.001G121600 [exp]	8.66	0.8565
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Potri.001G246300 [exp]	8.83	0.8031
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Potri.002G178700 [exp]	9.16	0.8396
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.006G087100 [exp]	9.48	0.8400	LAC110b
AT3G28850			Glutaredoxin family protein (....		Potri.017G081600 [exp]	9.94	0.8403
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Potri.010G125200 [exp]	16.00	0.8426	HMT4

Compare expression of checked genes

Potri.014G045500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.