Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44900 1301 / 0 ARABIDILLO-1, ARABIDILLO1 F-box Armadillo protein 1, ARABIDILLO-1 (.1) AT3G60350 1244 / 0 ARABIDILLO-2, ARABIDILLO2 F-box Armadillo protein 2, ARABIDILLO-2 (.1) AT2G23140 68 / 3e-11 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT2G14635 56 / 9e-10 unknown protein AT5G62560 61 / 2e-09 PUB41 RING/U-box superfamily protein with ARM repeat domain (.1) AT3G47820 61 / 3e-09 PUB39 PLANT U-BOX 39 (.1) AT4G15475 60 / 6e-09 F-box/RNI-like superfamily protein (.1) AT1G77000 59 / 7e-09 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT3G46510 60 / 8e-09 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G21410 59 / 1e-08 SKP2A F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G137100 [exp] 1514 / 0 AT2G44900 1300 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.001G079300 [exp] 1105 / 0 AT2G44900 1056 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.005G144700 [exp] 77 / 4e-14 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 75 / 2e-13 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.009G165900 [exp] 67 / 3e-11 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.005G088800 [exp] 61 / 3e-09 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.004G205000 [exp] 61 / 4e-09 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.009G029600 [exp] 61 / 5e-09 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.005G225400 [exp] 59 / 2e-08 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042900 [exp] 1212 / 0 AT2G44900 1321 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Lus10028197 [exp] 1079 / 0 AT2G44900 1144 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Lus10028198 [exp] 201 / 6e-60 AT2G44900 243 / 4e-76 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Lus10019308 [exp] 73 / 8e-13 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 73 / 9e-13 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10040998 [exp] 68 / 2e-11 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 65 / 1e-10 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10011516 [exp] 65 / 2e-10 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10024899 [exp] 61 / 4e-09 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10040834 [exp] 59 / 2e-08 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.014G046000.1 pacid=42764255 polypeptide=Potri.014G046000.1.p locus=Potri.014G046000 ID=Potri.014G046000.1.v4.1 annot-version=v4.1 ATGAATCGTAGGGTGCGGCGAAAAGTGGCAAAGAAGAGTAAGGAGAAGGTGGGAGTACCTGGTAACCCTGAAATTGGAGATGCGGATTTGTGTCCGGATA GTAATGAGGACGTTGATTGGACTAGCTTGCCAGATGATACTGTCATTCAGTTATTTTCTTGTTTGAATTATCGTGACCGTGCAAGCTTGTCATCAACGTG TAAGATATGGAGGGTTTTAGGTCTCTCTTCGTGCTTGTGGACTTCATTGGATCTTCGTGCCCACAAATGTGATCCTGGGATGGCAGTTTCACTTGCTTCT AGGTGTGTGAATCTTCAGAAGCTTCGGTTTCGTGGAGCAGAGTGTGCTGATGCAATAATACATCTTCAAGCAAGGAATTTGCGTGAAATAAGTGGTGATT ACTGTAGGAAAATAACGGACGCAACTCTTTCTATGATTGTTGCTCGGCATGAGGCACTTGAAACCCTCCAACTTGGGCCAGACTTCTGTGAGAGGATAAG TAGCGATGCTATTAAAGCAACAGCCTTTTGCTGTCCGAAACTAAAGAAACTTCGGCTGTCTGGATTAAGGGATGTTTCTGCTGAAGTCATCAATGCTTTA GCTAAGCATTGTCCGAATTTGATTGATATTGGGTTATTGGACTGTCTAAAGGTTGATGAAGTAGCATTGGGTAATGTAGTATCTGTTCTTTTCCTCTCAG TTGCAGGGACATCAAATATGAAGTGGGGTGTGGTCTCACATCTTTGGCACAAGCTGCCTAAACTGATCGGTTTGGATGTTTCAAGAACAGATATTGGTCC AAGTGCAGTTTCTAGATTGTTGTCATTATCACCTAGCTTGAAGGTTTTGTGTGCAATGAATTGCCCGGTTCTTGAAGAAGACAATAGCTTCAGTGTGAAT AAATACAAAGGTAAATTGTTACTAGCCCTTTTCACCGACATTTTTAAAGGACTAGCTTCTTTATTTGCCGATACTACAAAGACGGGGAAAAATGTCCTTT TGGATTGGAGGAATTTAAAGACCAAGGACAAGAACTTAGATGAAATCATGACTTGGCTAGAATGGATCCTATCCCATACTCTTTTGCGTACCGCTGAGAG TAATCCACAAGGTTTGGATGCTTTCTGGCTCAAGCAAGGTGCAACAATATTACTTAGTTTAATGCAGAGCTCACAGGAGGAAGTTCAAGAAAGGGCGGCC ACAGGACTTGCGACTTTTGTGGTCATTGATGATGAAAATGCTAGCATAGATTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGCGGCATACGTCTTCTTC TAAACCTTGCAAAATCTTGGAGGGAAGGTCTTCAGTCAGAGGCTGCTAAGGCAATAGCAAACTTGTCCGTAAATGCAAATGTTGCAAAAGCTGTTGCAGA AGAAGGAGGAATCCAAATCCTTGCTGGGTTGGCAAGTTCCATGAACAGGCTGGTTGCTGAAGAGGCTGCTGGAGGGCTTTGGAATCTTTCAGTCGGAGAA GAGCACAAGGGTGCCATTGCTGAGGCTGGTGGAGTCAAAGCTCTGGTTGACCTTATATTCAAATGGTTCTCTGGTGGCGATGGAGTTCTGGAACGTGCAG CTGGTGCTTTGGCAAATTTGGCGGCTGATGACAAGTGCAGCATGGAGGTTGCATTGGCAGGTGGTGTACATGCTTTGGTGATGCTTGCTCGTAATTGCAA GTTTGAGGGAGTACAAGAGCAGGCTGCTCGTGCCTTGGCTAACTTGGCTGCTCATGGAGATAGCAATACTAACAATGCTGCTGTTGGACAAGAAGCAGGT GCTCTTGAAGCCCTTGTTCAACTCACACGTTCACTCCATGAAGGTGTCAGGCAGGAAGCTGCTGGTGCATTGTGGAACTTATCATTTGATGACAGAAACC GAGAAGCAATTGCAGCAGCTGGTGGTGTTGAGGCCTTGGTAGCCCTTGCACAATCTTGTGGAAATGCCTCTCCAGGTCTTCAAGAGAGGGCTGCTGGAGC TCTCTGGGGATTGTCAGTGTCAGAAGCCAACAGCATTGCTATTGGACGAGAAGGAGGTGTTGTGCCTCTGATTGCTCTGGCACGCTCTGAGACCGAGGAT GTTCATGAAACCGCCGCAGGAGCTCTCTGGAATCTTGCTTTTAATCCAGGAAATGCTCTTCGTATAGTGGAGGAAGGAGGGGTTCCTGCACTTGTTGATC TATGTTCTTCATCTGCATCGAAGATGGCTCGCTTCATGGCAGCATTAGCATTGGCCTATATGTTTGACAGGAGAATGGATGAAGTTGCACCAATAGGAAC TTTAACAGAAAGCACTTCAAAGAGTGCGAATTTAGATGGAGCTAGAAGGATGGCTTTGAAGCACATTGAAGCTTTTGTCCTTACATTTTCTGATCCCCAA GCATTTGCCACCGCTGCTGCATCATCAGCTCCAGCAGCACTAGCACAAGTAACTGAGAGAGCTCGTATTCAAGAAGCAGGACATCTGCGATGCAGTGGAG CTGAAATTGGAAGATTTGTTGCCATGCTACGGAATCCTTCTTCTATACTAAAGGCTTGTGCTGCGTTCGCTCTTCTCCAGTTTACCATTCCTGGTGGACG GCATGCTTTGCACCATGCGAGTCTCATGCAGAGTGCTGGAGCTGCACGTGTCCTGCGACCTGCAGCTGCTGCAGCAACTGCACCACTTGAAGCCAAAATC TTTGCAAGAATTGTACTGCGCAATCTTGAGTACCACCATATAGAATCTTCGATATGA
AA sequence Show only first row Show all	>Potri.014G046000.1 pacid=42764255 polypeptide=Potri.014G046000.1.p locus=Potri.014G046000 ID=Potri.014G046000.1.v4.1 annot-version=v4.1 MNRRVRRKVAKKSKEKVGVPGNPEIGDADLCPDSNEDVDWTSLPDDTVIQLFSCLNYRDRASLSSTCKIWRVLGLSSCLWTSLDLRAHKCDPGMAVSLAS RCVNLQKLRFRGAECADAIIHLQARNLREISGDYCRKITDATLSMIVARHEALETLQLGPDFCERISSDAIKATAFCCPKLKKLRLSGLRDVSAEVINAL AKHCPNLIDIGLLDCLKVDEVALGNVVSVLFLSVAGTSNMKWGVVSHLWHKLPKLIGLDVSRTDIGPSAVSRLLSLSPSLKVLCAMNCPVLEEDNSFSVN KYKGKLLLALFTDIFKGLASLFADTTKTGKNVLLDWRNLKTKDKNLDEIMTWLEWILSHTLLRTAESNPQGLDAFWLKQGATILLSLMQSSQEEVQERAA TGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLNLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIQILAGLASSMNRLVAEEAAGGLWNLSVGE EHKGAIAEAGGVKALVDLIFKWFSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNTNNAAVGQEAG ALEALVQLTRSLHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALAQSCGNASPGLQERAAGALWGLSVSEANSIAIGREGGVVPLIALARSETED VHETAAGALWNLAFNPGNALRIVEEGGVPALVDLCSSSASKMARFMAALALAYMFDRRMDEVAPIGTLTESTSKSANLDGARRMALKHIEAFVLTFSDPQ AFATAAASSAPAALAQVTERARIQEAGHLRCSGAEIGRFVAMLRNPSSILKACAAFALLQFTIPGGRHALHHASLMQSAGAARVLRPAAAAATAPLEAKI FARIVLRNLEYHHIESSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Potri.014G046000 [exp]	0	1
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Potri.017G073900 [exp]	13.45	0.7648
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Potri.009G016900 [exp]	22.13	0.7252
AT5G52530			dentin sialophosphoprotein-rel...		Potri.004G079000 [exp]	98.04	0.6908
AT2G44970			alpha/beta-Hydrolases superfam...		Potri.014G055900 [exp]	103.48	0.6780
AT3G02890			RING/FYVE/PHD zinc finger supe...		Potri.003G091000 [exp]	131.87	0.6760
AT3G07690			6-phosphogluconate dehydrogena...		Potri.003G203800 [exp]	155.98	0.6489
AT5G19400		SMG7	Telomerase activating protein ...		Potri.001G275400 [exp]	165.98	0.6570
AT3G59430			unknown protein		Potri.017G029800 [exp]	199.78	0.6461
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Potri.006G033800 [exp]	201.81	0.6457	Pt-UBP5.3
AT5G15400			U-box domain-containing protei...		Potri.017G089600 [exp]	218.08	0.6317

Compare expression of checked genes

Potri.014G046000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.