Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44880 677 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G29230 405 / 2e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 376 / 4e-122 SLO1 SLOW GROWTH 1 (.1) AT2G29760 372 / 7e-120 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 369 / 1e-118 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31430 354 / 5e-115 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G37570 353 / 8e-115 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G45350 353 / 4e-114 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 342 / 9e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14820 341 / 4e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G019500 [exp] 404 / 3e-133 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.003G088600 [exp] 404 / 4e-133 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G125500 [exp] 400 / 2e-132 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 390 / 2e-129 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G207500 [exp] 382 / 8e-126 AT5G37570 602 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G105700 [exp] 383 / 5e-125 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 383 / 4e-124 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 380 / 1e-123 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 381 / 2e-123 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003422 [exp] 775 / 0 AT2G44880 679 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10026886 [exp] 436 / 5e-147 AT2G44880 376 / 3e-124 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10019797 [exp] 397 / 5e-131 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 393 / 1e-129 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 396 / 2e-129 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 382 / 4e-125 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10029436 [exp] 380 / 1e-123 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 377 / 1e-121 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 374 / 1e-120 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 370 / 2e-120 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.014G046200.1 pacid=42763849 polypeptide=Potri.014G046200.1.p locus=Potri.014G046200 ID=Potri.014G046200.1.v4.1 annot-version=v4.1 ATGCTAGACCAGAAGCAGCAACAAGGTATTCTTTGGAGTCCAATGGAAAGAGAGTGCCTGTTTCTTCTTCAACGATGCAGGACAAGAAAAACCCTCTTGC AAATCCACGCTCTCATTCTTCGGAACGCCATTGATGCTAATGTTAACATTCTTACTAAATTCATAACCACATGTGGGCAGCTCTCTAGTACCCGTCATGC TCGCCACTTGTTCGATAATAGGTCTCACAGAGGTGACACCTTCCTTTGCAATTCTATGATAAAATCTCATGTGGTTATGCGCCAATTAGCTGATGCTTTC ACTCTTTATAAAGATCTTAGGCGAGAAACATGTTTTGTGCCTGATAATTTCACTTTTACTGTATTGGCGAAGTGTTGTGCTTTGAGGATGGCTGTTTGGG AAGGTTTAGAGACGCATGGTCATGTTGTGAAAATTGGGTTTTGCTTTGATATGTATGTGTCAACGGCATTGGTGGATATGTACGCAAAGTTTGGGAATTT GGGTTTGGCAAGGAAGGTGTTTAATGATATGCCTGATAGAAGTTTAGTGTCGTGGACTGCGCTTATTGGTGGGTATGTGAGGCGCGGGGATATGGGCAAT GCGTGGTTTCTATTTAAGCTGATGCCTGGGAGAGATTCTGCGGCATTTAATCTTCTGATTGATGGATATGTTAAAGTGGGAGATATGGAATCTGCGAGGA GTTTGTTTGATGAGATGCCGGAAAGGAATGTGATTTCTTGGACCAGTATGATTTATGGGTACTGTAATAATGGTGATGTTTTATCTGCTAGGTTTTTGTT TGATGCTATGCCGGAGAAGAACCTTGTCTCTTGGAATGCGATGATTGGTGGATACTGTCAGAATAAGCAACCCCATGAAGCCTTAAAATTGTTTCGCGAG TTGCAGTCAAGCACGGTGTTTGAACCAAATGAAGTAACAGTTGTAAGCATTCTTCCAGCTATCGCTACTTTGGGTGCTCTGGAATTGGGTGAATGGGTAC ATCGATTTGTTCAGAGGAAGAAACTTGATGCTGCAGTCAATGTCTGTACTTCACTTGTCGATATGTATTTAAAATGTGGAGAAATATCAAAAGCAAGAAA AGTTTTTAGCGAGATCCCTAAAAAGGAAACGGCTACCTGGAATGCTTTGATAAATGGATTTGCAATGAATGGGCTTGCTAGTGAAGCACTGGAGGCATTT TCGGAGATGCAACAGGAAGGAATTAAGCCAAATGACATTACCATGACTGGTGTTTTATCTGCTTGCAGCCATGGTGGTTTGGTAGAGGAAGGGAAAGGAC AGTTTAAAGCCATGATCGAATCTGGGCTTAGCCCAAAAATTGAGCATTATGGATGCTTAGTTGATTTATTAGGGAGGGCAGGGTGCTTAGACGAAGCTGA GAATTTGATTAAAAGCATGCCTTTTGAGGCTAATGGAATAATTCTGAGCTCCTTTTCATTTGCCTGTGGATTCTCCAACGATGTTACTAGAGCGCAGAGA GTACTAAATCAGGCTGTCAATATGGAGCCAGGTAACAATGGAATCTATGTCATGATGAGGAACTTATATGCCATGGAGGAGCGGTGGAAAGATGTGAAAG AAATTAATGGATTGATGAGGAGAAGGGGGGCAAAGAAGGAGGTTGGTAGTAGTGCTATAGAAGTTGATAGTAGGGTTTCAGAGTTCATATCTGGGGGGAT AGCTCACCCACAATTGGATGTTATAGAGTCTGTCATAGGTCAATTGTGGATACACATGAGGGATAGTGTGGTTGCTCAAACTCCATAA
AA sequence Show only first row Show all	>Potri.014G046200.1 pacid=42763849 polypeptide=Potri.014G046200.1.p locus=Potri.014G046200 ID=Potri.014G046200.1.v4.1 annot-version=v4.1 MLDQKQQQGILWSPMERECLFLLQRCRTRKTLLQIHALILRNAIDANVNILTKFITTCGQLSSTRHARHLFDNRSHRGDTFLCNSMIKSHVVMRQLADAF TLYKDLRRETCFVPDNFTFTVLAKCCALRMAVWEGLETHGHVVKIGFCFDMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMGN AWFLFKLMPGRDSAAFNLLIDGYVKVGDMESARSLFDEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFRE LQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAF SEMQQEGIKPNDITMTGVLSACSHGGLVEEGKGQFKAMIESGLSPKIEHYGCLVDLLGRAGCLDEAENLIKSMPFEANGIILSSFSFACGFSNDVTRAQR VLNQAVNMEPGNNGIYVMMRNLYAMEERWKDVKEINGLMRRRGAKKEVGSSAIEVDSRVSEFISGGIAHPQLDVIESVIGQLWIHMRDSVVAQTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	0	1
AT2G33760			Pentatricopeptide repeat (PPR)...		Potri.004G043400 [exp]	1.00	0.9525
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Potri.010G086900 [exp]	2.82	0.9331
AT5G46100			Pentatricopeptide repeat (PPR)...		Potri.011G057900 [exp]	3.00	0.9440
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	3.16	0.9479
AT2G03880		REME1	required for efficiency of mit...		Potri.004G208000 [exp]	4.00	0.9423
AT1G53330			Pentatricopeptide repeat (PPR)...		Potri.011G108500 [exp]	4.35	0.9153
AT5G44230			Pentatricopeptide repeat (PPR)...		Potri.005G119000 [exp]	4.47	0.9151
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	5.91	0.9409
AT5G19020		MEF18	mitochondrial editing factor ...		Potri.010G029900 [exp]	5.91	0.9340
AT3G25060			Tetratricopeptide repeat (TPR)...		Potri.002G245200 [exp]	7.14	0.9171

Compare expression of checked genes

Potri.014G046200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.