Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HA1.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60330 1462 / 0 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) AT5G62670 1437 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G47950 1436 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT2G07560 1370 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT3G42640 1353 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT5G57350 1346 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT4G30190 1344 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G18960 1342 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT1G80660 1339 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT2G24520 1339 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G080500 [exp] 1550 / 0 AT5G62670 1379 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.015G066000 [exp] 1454 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 1451 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.006G165900 [exp] 1380 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.018G090300 [exp] 1374 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.018G006000 [exp] 1368 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G112400 [exp] 1359 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G275000 [exp] 1359 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G188600 [exp] 1356 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040166 [exp] 1469 / 0 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10004370 [exp] 1465 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10003259 [exp] 1447 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 1447 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10028201 [exp] 1373 / 0 AT3G60330 1422 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10001631 [exp] 1357 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10026946 [exp] 1347 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10024105 [exp] 1342 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10042445 [exp] 1240 / 0 AT1G80660 1490 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10026224 [exp] 1234 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.014G046300.3 pacid=42763245 polypeptide=Potri.014G046300.3.p locus=Potri.014G046300 ID=Potri.014G046300.3.v4.1 annot-version=v4.1 ATGGTTGAGAATTCGATTGCCCTTGATGCCATTAACAAGGAAGCTGTAGATCTGGAAAATATACCCCTTGAAGAAGTTTTCGACAATCTCAAGTGTACAA GAGAAGGTCTGACCGCTAATGAAGTTCGAGAGAGGTTGGATTTGTTTGGGTACAATAAACTTGAAGAGAAAAAGGAAAGTAAGCTACTGAAGTTTTTGGG ATTTATGTGGAATCCACTGTCATGGGTCATGGAAGCTGCAGCAATCATGGCCATTGGTCTTGCACATGGAGGGAACAAGAGTGCAGACTATCATGATTTT GTTGGCATCATCACCTTGCTTATAATCAATTCAACCATCAGTTTTATAGAGGAAAACAATGCTGGCAATGCAGCTGCTGCTCTTATGGCTCGGTTGGCCC CGAAAGCTAAGGTTCTACGTGATGGAAGATGGAGTGAAGAAGAAGCTTCGGTGTTGGTTCCTGGGGATATTGTTAGCATAAAACTTGGTGATATTATTCC TGCCGATGCACGTCTTTTGGAAGGAGATCCTTTAAAGATTGACCAGTCTGCTCTTACCGGAGAATCACTTCCAGTAACCAAGAGTCCTGGTGACGGAGTT TATTCAGGTTCAACATGCAAGCAGGGTGAAATTGAAGCAGTTGTCATTGCAACTGGAGTTCATACTTTCTTTGGCAAGGCAGCTCATCTTGTTGAGAACA CTACACATGTTGGACATTTCCAAAAGGTTTTAACAGCAATTGGAAACTTCTGCATTTGCTCAATTGCAGCTGGGATGGTTATTGAGATCATCGTGATATA TGGGATTCAAGAGAGGGGATACCGAGTTGGCATTGATAATCTACTTGTCCTGTTAATTGGTGGGATCCCAATTGCAATGCCCACTGTTCTGTCAGTTACA ATGGCTATTGGTTCGCATCGCCTGTCTCAGCAGGGTGCTATAACAAAGAGAATGACTGCCATTGAAGAAATGGCTGGAATGGATGTCCTTTGCAGTGATA AAACAGGCACATTGACTCTTAACAAGCTTACAGTGGACAAAAATATGATTGAGGTTTTTGCCAAAGGTGTTGACAAGGATATGGTTGTGCTTATGGCTGC AAGAGCGTCTAGATTAGAGAACCAAGATGCTATTGATTGTGCAATTGTTTCAATGTTGGCAGACCCTAAGGAGGCACGAGCTGGCATTCAAGAAGTTCAC TTTCTTCCATTTAATCCAACTGACAAAAGGACTGCTCTTACATACATAGACGCTGCTGGGAAAATGCACAGAGTCAGCAAAGGTGCACCAGAACAGATTC TTCATCTGGCACACAACAAAACAGAAATCGAGCGAAGGGTACATTCAATAATTGACAAATTTGCAGAACGCGGGCTAAGATCCCTTGCAGTTGCTCGCCA GGGAGTGCCTGCTGGTACAAAGGACAGTCCAGGTGGACCCTGGGAATTTGTTGGGCTTCTCCCACTCTTTGACCCTCCACGCCACGACAGTGCTGAAACA ATTAGACGAGCACTGGATCTTGGTGTCAGTGTTAAAATGATTACAGGTGACCAACTCGCAATTGCCAAGGAAACAGGAAGGAGGCTTGGGATGGGCACAA ATATGTACCCATCTTCATCCCTGCTCGGTGAAGGCAAAGATGATGCAGTTGGAGGACTTCCAATTGATGAGCTCATTGAGAAAGCTGATGGTTTTGCTGG TGTCTTCCCCGAACATAAATATGAGATTGTGAGGAGACTACAAGCTAGAAAGCATATATGTGGAATGACTGGTGATGGAGTGAACGATGCCCCTGCCTTA AAGAAAGCTGACATTGGAATTGCTGTAGCAGATTCAACAGACGCTGCCCGTAGTGCTTCTGATATAGTTCTGACTGAACCTGGGCTGAGTGTAATCATTA GTGCTGTCTTAACAAGCCGTGCAATCTTCCAGAGAATGAAAAATTATACAATATATGCTGTGTCTATCACTATTCGTATAGTGCTAGGGTTTATGTTGCT GACTGTCTTCTGGAAATTTGACTTCCCTCCTTTCATGGTTCTTGTCATTGCCATTCTCAATGATGGTACCATCATGACCATATCCAAGGACAGAGTCAAG CCTTCTCCCCTCCCTGACAGTTGGAAGCTCAGTGAAATTTTTGCTACTGGTGTTGTTCTTGGTAGTTACCTGGCTCTAATGTCTGTCGTCTTCTTCTGGT TAGCTTATGAAACTAACTTCTTCCCGGAACATTTTAATGTGAGGGACTTCAACCAGCACCATTTTAACATGACGGATGAAAAAATTGCCAATCAACTTAA AGAACAATTGGCATCTGCTGTGTATCTTCAAGTCAGCACCATTAGTCAGGCCTTGATATTCGTGACTCGCTCCCGGAGCTGGTCATTCCGGGAACGTCCA GGCCTTCTGCTTGTTTCTGCCTTCATTATTGCCCAACTGATTGCAACCGTCATCTCTGCTACTGCAACCTGGAAATTTGCTGGAATCAGAAGTATTGGTT GGGGCTGGACAGCCGTCATTTGGGTGTACAATATATTGACTTACTTTCTGCTGGATCCTATCAAATTCGCTGTCCGATACGCTCTAAGTGGAAGAGCCTG GAATAATATTATAGACCAAAGGACTGCTTTTACCAACAAAAAGGACTTTGGGAAGGAAGCTCGTTCGGCAGCATGGGCAGCTGAGCAGCGAACACTACAT GGCCTTCAGTCCGCTGAGACAAAAATGTTTTCCGAGAGAAATACCTTCAGAGACATCAATCTCATGGCAGAAGAAGCGAAAAGGCGAGCAGAAATTGCAA GGGTGAGAGAGCTTCATACACTGAAAGGCAAGGTTGAGTCATTTGCCAAGCTAAGGGGCTTGGATATTGATTCCATGAATCAGCATTACACAGTGTAA
AA sequence Show only first row Show all	>Potri.014G046300.3 pacid=42763245 polypeptide=Potri.014G046300.3.p locus=Potri.014G046300 ID=Potri.014G046300.3.v4.1 annot-version=v4.1 MVENSIALDAINKEAVDLENIPLEEVFDNLKCTREGLTANEVRERLDLFGYNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIGLAHGGNKSADYHDF VGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWSEEEASVLVPGDIVSIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKSPGDGV YSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTTHVGHFQKVLTAIGNFCICSIAAGMVIEIIVIYGIQERGYRVGIDNLLVLLIGGIPIAMPTVLSVT MAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNMIEVFAKGVDKDMVVLMAARASRLENQDAIDCAIVSMLADPKEARAGIQEVH FLPFNPTDKRTALTYIDAAGKMHRVSKGAPEQILHLAHNKTEIERRVHSIIDKFAERGLRSLAVARQGVPAGTKDSPGGPWEFVGLLPLFDPPRHDSAET IRRALDLGVSVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGEGKDDAVGGLPIDELIEKADGFAGVFPEHKYEIVRRLQARKHICGMTGDGVNDAPAL KKADIGIAVADSTDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLTVFWKFDFPPFMVLVIAILNDGTIMTISKDRVK PSPLPDSWKLSEIFATGVVLGSYLALMSVVFFWLAYETNFFPEHFNVRDFNQHHFNMTDEKIANQLKEQLASAVYLQVSTISQALIFVTRSRSWSFRERP GLLLVSAFIIAQLIATVISATATWKFAGIRSIGWGWTAVIWVYNILTYFLLDPIKFAVRYALSGRAWNNIIDQRTAFTNKKDFGKEARSAAWAAEQRTLH GLQSAETKMFSERNTFRDINLMAEEAKRRAEIARVRELHTLKGKVESFAKLRGLDIDSMNQHYTV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Potri.014G046300 [exp]	0	1	Pt-HA1.5
					Potri.006G089451 [exp]	1.73	0.9378
AT1G17860			Kunitz family trypsin and prot...		Potri.004G067600 [exp]	3.46	0.8809
AT1G52190			Major facilitator superfamily ...		Potri.012G087500 [exp]	4.89	0.8931
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Potri.010G092800 [exp]	5.91	0.8786
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Potri.011G131051 [exp]	7.48	0.8774
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.013G040401 [exp]	8.94	0.8351
AT4G38460		GGR	geranylgeranyl reductase (.1)		Potri.015G043400 [exp]	13.41	0.8288
AT1G19020			unknown protein		Potri.015G070700 [exp]	14.28	0.8332
AT1G72430			SAUR-like auxin-responsive pro...		Potri.003G071000 [exp]	16.97	0.8042
AT5G40610			NAD-dependent glycerol-3-phosp...		Potri.017G070900 [exp]	17.54	0.7813

Compare expression of checked genes

Potri.014G046300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.