Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21220 83 / 1e-19 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT1G51660 81 / 5e-19 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT1G18350 65 / 2e-13 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT1G73500 62 / 3e-12 ATMKK9 MAP kinase kinase 9 (.1) AT1G07150 50 / 5e-08 MAPKKK13 mitogen-activated protein kinase kinase kinase 13 (.1.2) AT3G06230 46 / 1e-06 ATMKK8 MAP kinase kinase 8 (.1) AT1G32320 45 / 4e-06 ATMKK10 MAP kinase kinase 10 (.1) AT5G40440 44 / 9e-06 ATMKK3 mitogen-activated protein kinase kinase 3 (.1) AT5G56580 43 / 1e-05 ANQ1, ATMKK6 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) AT2G30040 41 / 9e-05 MAPKKK14 mitogen-activated protein kinase kinase kinase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249300 [exp] 86 / 1e-20 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.008G009800 [exp] 86 / 1e-20 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.015G030700 [exp] 72 / 1e-15 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.010G049500 [exp] 69 / 1e-14 AT1G18350 288 / 1e-96 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.008G183700 [exp] 67 / 7e-14 AT1G18350 289 / 5e-97 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.012G043200 [exp] 52 / 1e-08 AT1G73500 381 / 2e-133 MAP kinase kinase 9 (.1) Potri.003G130000 [exp] 48 / 4e-07 AT5G55090 232 / 2e-72 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.009G073200 [exp] 48 / 4e-07 AT1G07150 360 / 9e-120 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.001G278600 [exp] 44 / 1e-05 AT1G07150 353 / 2e-117 mitogen-activated protein kinase kinase kinase 13 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035764 [exp] 84 / 5e-20 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10040128 [exp] 61 / 1e-12 AT1G73500 186 / 1e-59 MAP kinase kinase 9 (.1) Lus10003677 [exp] 61 / 1e-12 AT3G21220 102 / 3e-27 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Lus10001081 [exp] 60 / 1e-11 AT1G73500 296 / 2e-101 MAP kinase kinase 9 (.1) Lus10037339 [exp] 43 / 2e-05 AT1G51660 226 / 4e-73 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10037340 [exp] 41 / 2e-05 AT3G21220 95 / 4e-25 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Lus10012938 [exp] 41 / 8e-05 AT5G56580 621 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10015185 [exp] 41 / 0.0001 AT1G09000 692 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10034060 [exp] 40 / 0.0002 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10010519 [exp] 40 / 0.0002 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.014G047101.1 pacid=42763840 polypeptide=Potri.014G047101.1.p locus=Potri.014G047101 ID=Potri.014G047101.1.v4.1 annot-version=v4.1 ATGTGTGACGAGTATGCAGGGGACATCTGGAGTTTTGGATTGAGTATCTTGGAGATTTACCCAGGGAGGTTTCCAATTGAAGTTGAGACCCGGGATTATT TGACAAGGCTGGTGTTTGCAATATGTATGTCAGCCCCGCCGGAGGCACCGCCGAGTGCATCAACGGAGTTTCGCTACTTCATTACATGCTGTTTGCAAAG AGAGCCAGAGAGAAGATGGGAGTGCTCTGCAGTTGTTGCAACACCCTTTTATACTGCAGAACCAGGTGAATCAGTGAAAATTGCAAGCAAAAACAAGAAC TCTTCCAATAATGTTCTGCTCCTTTTCCATCCTGTCACTTCCATCATAAGTAATCTCTTCCATCAAATATACTCAGCGATCACCTGGTGTTCATGTTTGT AA
AA sequence Show only first row Show all	>Potri.014G047101.1 pacid=42763840 polypeptide=Potri.014G047101.1.p locus=Potri.014G047101 ID=Potri.014G047101.1.v4.1 annot-version=v4.1 MCDEYAGDIWSFGLSILEIYPGRFPIEVETRDYLTRLVFAICMSAPPEAPPSASTEFRYFITCCLQREPERRWECSAVVATPFYTAEPGESVKIASKNKN SSNNVLLLFHPVTSIISNLFHQIYSAITWCSCL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21220		ATMAP2K_ALPHA, ...	ARABIDOPSIS THALIANA MITOGEN-A...		Potri.014G047101 [exp]	0	1
AT1G43760			DNAse I-like superfamily prote...		Potri.004G128941 [exp]	22.58	0.4386
AT5G28780			PIF1 helicase (.1)		Potri.009G007400 [exp]	67.73	0.4242
					Potri.013G012766 [exp]	163.69	0.3781

Compare expression of checked genes

Potri.014G047101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.