Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02090 394 / 5e-140 ATCSN7, COP15, CSN7II, FUS5 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G137400 [exp] 476 / 2e-172 AT1G02090 381 / 6e-135 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Potri.003G081066 [exp] 147 / 3e-44 AT1G02090 179 / 1e-57 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Potri.001G153900 [exp] 89 / 7e-22 AT1G02090 87 / 1e-21 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Potri.003G098400 [exp] 40 / 0.0007 AT5G45620 647 / 0.0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042908 [exp] 402 / 2e-142 AT1G02090 385 / 7e-136 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Lus10028205 [exp] 352 / 1e-123 AT1G02090 355 / 2e-125 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Lus10004367 [exp] 242 / 4e-80 AT1G02090 265 / 1e-89 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Lus10040162 [exp] 215 / 9e-70 AT1G02090 244 / 1e-81 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01399 [poplar] [flax] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Potri.014G047200.1 pacid=42762934 polypeptide=Potri.014G047200.1.p locus=Potri.014G047200 ID=Potri.014G047200.1.v4.1 annot-version=v4.1 ATGGACATCGAACAGAAACAAGCAGAGCTCATCGATCACTTCGTAAATCAAGCATCCACTCTAAAAGCCTCCGCTCTTTGGCCTCTTATTATCGAAGCCA CTTCTCATCCTTCTCTCTTCGCCTTCTCCGAGATTCTCTCTTCGCCCACCGTCTCCGAGCTTGAAGGAACTGAGAATTCCTTTTGCCTTGATGTTCTTCG GTTGTTTGCCCATGGAACCTGGAGTGACTACAAAAGTAATGCTGGTCGTCTTCCACAATTGGTTCCTGATCAAGTCCTCAAGCTAAAGCAACTTACTGTG CTGACACTGGCTGAAATGAACAAGGTACTTCCCTATGATCAGCTAATGCAGGAGCTAGATGTTACAAATGTCCGTGAACTTGAAGATTTTCTTATCAATG AGTGCATGTATGCGGGAATAGTACGAGGAAAGCTAGATCAGTTGCGAAGGTGCTTTGAGGTCCAATTTGCTGCTGGGAGGGACCTTAGGCCTGGACAACT TGGGAATATGTTACAAACACTATCAAACTGGTTGGATACATCAGATGATTTGCTTGTCTCGATTCAGGAGAAGATAAAATGGGCTGATTCTACGAGTGAA TTGGATAAGAAGCACCAAAAGGATGTAGAATATAGGGTGGAGGAAGTAAAGAAGTCACTCTCCCTCAAGGCAGACATTGACTTCCGAGGGCATGAGGAGA TCTATTCTGAACCTGGTGGAGTGATGGACTACGAGGAAGACCGAAGCCGGCCCAAGAGGAGACGACATCCAATATATTGA
AA sequence Show only first row Show all	>Potri.014G047200.1 pacid=42762934 polypeptide=Potri.014G047200.1.p locus=Potri.014G047200 ID=Potri.014G047200.1.v4.1 annot-version=v4.1 MDIEQKQAELIDHFVNQASTLKASALWPLIIEATSHPSLFAFSEILSSPTVSELEGTENSFCLDVLRLFAHGTWSDYKSNAGRLPQLVPDQVLKLKQLTV LTLAEMNKVLPYDQLMQELDVTNVRELEDFLINECMYAGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGNMLQTLSNWLDTSDDLLVSIQEKIKWADSTSE LDKKHQKDVEYRVEEVKKSLSLKADIDFRGHEEIYSEPGGVMDYEEDRSRPKRRRHPIY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Potri.014G047200 [exp]	0	1
AT1G30880			unknown protein		Potri.003G155400 [exp]	3.16	0.7981
AT5G63480			unknown protein		Potri.015G097800 [exp]	4.12	0.7326
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.001G423400 [exp]	4.69	0.7496
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Potri.005G152200 [exp]	7.74	0.7855
AT2G40780			Nucleic acid-binding, OB-fold-...		Potri.019G061200 [exp]	8.24	0.7996
AT4G08960			phosphotyrosyl phosphatase act...		Potri.002G099000 [exp]	9.16	0.7728
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.016G081700 [exp]	10.95	0.7561
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Potri.008G069200 [exp]	11.40	0.7757
AT5G10010			unknown protein		Potri.005G083700 [exp]	13.60	0.6983
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Potri.001G072000 [exp]	14.00	0.7401	ERF1.6

Compare expression of checked genes

Potri.014G047200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.