Plant FIBer expression Database

Potri.014G047300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G02100 530 / 0 SBI1 SUPPRESSOR OF BRI1, Leucine carboxyl methyltransferase (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028206
[exp]
542 / 0 AT1G02100 513 / 0.0 SUPPRESSOR OF BRI1, Leucine carboxyl methyltransferase (.1.2.3)
Lus10042909
[exp]
495 / 3e-176 AT1G02100 470 / 3e-167 SUPPRESSOR OF BRI1, Leucine carboxyl methyltransferase (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF04072 LCM Leucine carboxyl methyltransferase
Representative CDS sequence
>Potri.014G047300.2 pacid=42762503 polypeptide=Potri.014G047300.2.p locus=Potri.014G047300 ID=Potri.014G047300.2.v4.1 annot-version=v4.1
ATGGCAACAAGGCCGGTAGCCGATTCGCATAGCAACAGAGCAGCAGTTCAAGCCACAAACGATGACGCTTCCGCCAGTAAACTGTCTTGTGTTAAGAAGG
GATACATGAAAGACGATTATATCCATTTATTTGCTAGAAGACCTGTGAGGCGATCTCCTATAATCAACCGCGGCTATTTTGCGCGCTGGGCTGCTCTTCG
AAAGCTTCTCTTCCAGTTTCTTGATTGTGAATCGAATATTGATGGAAAATGCGATTCAAAGAAGCAGATATTATCATTCGGAGCAGGATTTGATACCATG
TATTTTCAACTACAGGATGAAGGAAAAGCGCCATTTTTATATGTAGAGCTGGATTTTAAGGAGGTAACTAGTAAAAAGGCAGCAATTATTGAAACCAGCA
GTCAGTTGAGGGAAAAGCTTGGTGCTACGGCTTCAATCTTACCAGAGAAGGGAGAAGTGCTCAGTGATCATTACAAGCTGCTCTCGGTTGATTTGCGTGA
TATACAAAAACTAGATGATATCATAGCATTGGCTGGTATGAATCCCAGCTTGCCAACGTTTATAATTGCAGAATGCGTTTTAATATACTTGGATCCTGAG
TCAACTCGTGGTATAGTCGGTTGGGCTTCAAAAACGTTTTCAACAGCAGCATTTTTCTTATATGAGCAGATACATCCGGATGATGCTTTTGGGCAGCAAA
TGATCAGAAACTTGGAGAGTCGAGGTTGTGCACTATTGGGTATCTATGACACACCAACTTTACTTGCGAAGGAAAAACTTTTTCTTGATCAAGGATGGCA
GAGAGCTGTTGCCTGGGACATGCTGAAAGTTTATACTGATTTTATTGAAGCTAAAGAAAGGCGCAGGATTGAACGATTGGAATTGTTCGATGAGTTTGAA
GAGTGGTACATGATGCAGGAGCACTACTGTGTGGCTTATGCAATCAACGATGCCATGGGATTCTTTGGGGATTTTGGTTTTACTAAGACCCAGCCGCACG
TGATCAACTCTCCCTCAACAGTAGCATTGCCATGA
AA sequence
>Potri.014G047300.2 pacid=42762503 polypeptide=Potri.014G047300.2.p locus=Potri.014G047300 ID=Potri.014G047300.2.v4.1 annot-version=v4.1
MATRPVADSHSNRAAVQATNDDASASKLSCVKKGYMKDDYIHLFARRPVRRSPIINRGYFARWAALRKLLFQFLDCESNIDGKCDSKKQILSFGAGFDTM
YFQLQDEGKAPFLYVELDFKEVTSKKAAIIETSSQLREKLGATASILPEKGEVLSDHYKLLSVDLRDIQKLDDIIALAGMNPSLPTFIIAECVLIYLDPE
STRGIVGWASKTFSTAAFFLYEQIHPDDAFGQQMIRNLESRGCALLGIYDTPTLLAKEKLFLDQGWQRAVAWDMLKVYTDFIEAKERRRIERLELFDEFE
EWYMMQEHYCVAYAINDAMGFFGDFGFTKTQPHVINSPSTVALP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G02100 SBI1 SUPPRESSOR OF BRI1, Leucine ca... Potri.014G047300
[exp]
0 1
AT2G32580 Protein of unknown function (D... Potri.002G227100
[exp]
1.73 0.6965
AT3G08590 iPGAM2 2,3-biphosphoglycerate-indepen... Potri.006G113300
[exp]
2.82 0.6818
AT5G03340 ATPase, AAA-type, CDC48 protei... Potri.006G125500
[exp]
4.24 0.6715 CDC48.3
AT5G33320 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE ... Potri.012G082100
[exp]
9.38 0.6059
AT3G53970 proteasome inhibitor-related (... Potri.016G103800
[exp]
10.00 0.6354
AT3G12010 unknown protein Potri.006G195000
[exp]
15.87 0.5551
AT5G27380 GSHB, GSH2 glutathione synthetase 2 (.1) Potri.013G026800
[exp]
18.57 0.5605
AT2G17200 DSK2 ubiquitin family protein (.1) Potri.009G166000
[exp]
24.24 0.5394
AT4G01320 ATSTE24 Peptidase family M48 family pr... Potri.014G088900
[exp]
24.39 0.6123 ATSTE24.1
AT3G23000 PKS7, ATSRPK1, ... SNF1-RELATED PROTEIN KINASE 3.... Potri.008G160200
[exp]
25.19 0.6263 CIPK4.1

Potri.014G047300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.