Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60320 862 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT1G02110 715 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 308 / 7e-93 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT2G34670 217 / 2e-60 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT1G52320 168 / 5e-45 unknown protein AT5G25590 166 / 1e-42 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 167 / 2e-42 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 160 / 2e-40 Protein of unknown function (DUF630 and DUF632) (.1) AT2G17110 123 / 7e-29 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 117 / 1e-26 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G137600 [exp] 1088 / 0 AT3G60320 699 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G056700 [exp] 325 / 8e-101 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G112300 [exp] 316 / 2e-97 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.003G054800 [exp] 179 / 4e-47 AT1G52320 626 / 0.0 unknown protein Potri.009G137500 [exp] 178 / 1e-46 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.006G244100 [exp] 175 / 2e-45 AT5G25590 603 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.001G181100 [exp] 174 / 2e-45 AT1G52320 615 / 0.0 unknown protein Potri.004G177200 [exp] 170 / 6e-44 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.018G036400 [exp] 170 / 7e-44 AT5G25590 656 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042910 [exp] 727 / 0 AT3G60320 727 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10028207 [exp] 577 / 0 AT3G60320 570 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041884 [exp] 324 / 1e-102 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10028431 [exp] 328 / 5e-102 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10036155 [exp] 218 / 7e-61 AT2G34670 516 / 3e-175 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10022116 [exp] 183 / 2e-48 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10037901 [exp] 169 / 4e-45 AT5G25590 627 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025777 [exp] 171 / 2e-44 AT1G52320 652 / 0.0 unknown protein Lus10035887 [exp] 167 / 9e-43 AT1G52320 747 / 0.0 unknown protein Lus10025077 [exp] 166 / 2e-42 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [poplar] [flax] DUF632 Protein of unknown function (DUF632) PF04783 [poplar] [flax] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Potri.014G047400.1 pacid=42762289 polypeptide=Potri.014G047400.1.p locus=Potri.014G047400 ID=Potri.014G047400.1.v4.1 annot-version=v4.1 ATGGGCTGCACGGCGTCGAAGCTAGACAACGAGGACACAGTACGGCGGTGCAAGGAGCGCCGCCGCCTAATGAAAGAAGCAGTCTACGCCCGCCACCACT TAGCTGCTGCACACGCAGACTACTGCCGTTCACTCCGAGTCACTGGCTCAGCTCTATCCAATTTCGCAGCTGGTGAATCCCTCTCTGTTTCTGACCAAAC CCCTGTTGTTATCCTCCACCCTCCTACAGCAACCAGCCCAACTCCTCCTAGCAATCCTATCCCTCCACGTGTACCACCTTCCCCTTCCCCCTCCCTCCAC CCTCCACCACCTCCTCCTCCATTTTCTCCTTCTATAGCTAGCTCTAAACCTCCACATATTCTTTCTTCTTCAAATATTCACTCTAAGTCTAACCGCCACC GCCGCGTCAAGCCTCAGAAGCTTCCTCATATTCTTTCAGAATCAAGCCCTTCAGTCTCTCCGAAATCGAATTATGATTATCCAACTGCTTTTCAAAATCA TTCAACTTATTCTACAACGCCTTCTCAAGCTTCTTCTGTATGGAACTGGGAAAATTTCTACCCTCCTTCCCCTCCAGACTCAGAATTCTTCGCTCGAAAA GCCAACCACAACCAACAGCAACAGCATCCCCATTTAGATACTGATGATGGGTCGTCATCAGATGCAGATGAGGATGTTGCAACAGAGAGATTCTCAGAGT ATGACTTCTTTAACGAAAAGCAATACACACAGCATAAGAAGCAGCAGCAACAAAATTATAGCGAGACGGAGCAAGAGGAAGTTCAATGCAGTGAATGGGG AGATCATGATCATCTCAGCAACTCAACAACATCATCGGATGAGGATAATGATACTGAGTCCAGATCCGAGATCGGAACCCGGTCCAATTTCGGGCCAGTC AAGCACCCTTCGCAGCAACAACCACATCCACAACAATATGATAATGCTTTTGGTAAGTTGGATAACAAGTCTGAGGCGGGATCCTCGACGACCAGTTACA GGACTGGAGAGGTTTCTAATATGAAAATGGTTGTCAGACATAAGGATTTGAATGAGATTGTTGGGGCTATCAAGGAGAATTTTGACAAGGCGGCTGCTGC TGGAGATCAGGTTTCGGAGATGCTTGAGATCGGTAGAGCTCAGCTTGATAGAAGTTTCCGGCAATTGAAGAAGACTGTGTATCATTCGAGTAGTGTTTTG AGCAACTTAAGCTCGAGTTGGACTTCAAAGCCACCGTTGGCCGTGAAGTATCGACTCGATACCGGTTCACTGATTGAACCTGGTGGTCCAAGAAGTCTTT GTTCAACCGTAGAACGGTTGTTGGCCTGGGAGAAGAAACTCTACGACGAAGTTAAGGATAGAGAAGGTGTTAAAATTGAGCATGAGAAGAAGCTGTCGAC TCTACAAAGTCAGGAATACAAGGGGGATGAAGCAAAGCTAGACAAGACCAAAGCTGCAATAACAAGACTGCAATCTCTGATTATTGTTACATCTCAGGCT GTTTCTACCACCTCAACGGCCATTATTGGACTTAGAGACAGTGATCTTGTTCCTCAGCTAGTTGAACTCTGTCATGGGTTCATGTACATGTGGAAGTCAA TGCATCAATACCATGAAGTTCAGAACCACATTGTGCAGCAAGTCCGTGGCCTTGTGAACCAATCAGCCAAGGGTGATTCAACTTCTGAATTGCACAAGCA GGCTACACGTGACCTTGAATCAGCTGTTTCTGCTTGGCACTCCAGTTTCTGCCACCTGATAAAGTTCCAACGGGACTTTATTCAATCCATCCATGGCTGG TTCAAGCTCACCCTTATTCCTGTAAGCAATGACAACATGAATGCCAACATGGAACCCTCTGATGTATATGCCTTCTGTGATGAGTGGAAGCTTGCCCTTG ACCGTGTCCCTGACACAGTAGCTTCTGAAGCCATCAAGAGCTTTATCAATGTTGTTCATGTGATATCTACAAAACAAACTGAAGAGCTCAAGATTAGAAA GCGAACAGATACTGCATCAAAGGAGCTGGAAAAGAAGGCTTCCTCTCTTCGCAGCTTAGAAAGAAAGTTCTACCACTCATACTCCATGGTTGGCATTGGA CCTCCTGATACTGGTGGATCTGATAATGGACAGTTTTTGGATGCTCGTGATCCACTGGCTGAAAAGAAATCAGAGCTTGTAGCCTGTCAGAGGCGTGTGG AAGATGAAATGCTGAGGCATGCTAAGGCAGTAGAGGTGACAAGAGCAATGACACTAAATAACCTTCAGACAGGCCTCCCTGGAGTTTTTCAGGCATTGAC CAGTTTTTCTTCCTTGTTTATGGAGGCACTTCAATTGGTATGCAACCGTTCCTACGCCATCAAATAG
AA sequence Show only first row Show all	>Potri.014G047400.1 pacid=42762289 polypeptide=Potri.014G047400.1.p locus=Potri.014G047400 ID=Potri.014G047400.1.v4.1 annot-version=v4.1 MGCTASKLDNEDTVRRCKERRRLMKEAVYARHHLAAAHADYCRSLRVTGSALSNFAAGESLSVSDQTPVVILHPPTATSPTPPSNPIPPRVPPSPSPSLH PPPPPPPFSPSIASSKPPHILSSSNIHSKSNRHRRVKPQKLPHILSESSPSVSPKSNYDYPTAFQNHSTYSTTPSQASSVWNWENFYPPSPPDSEFFARK ANHNQQQQHPHLDTDDGSSSDADEDVATERFSEYDFFNEKQYTQHKKQQQQNYSETEQEEVQCSEWGDHDHLSNSTTSSDEDNDTESRSEIGTRSNFGPV KHPSQQQPHPQQYDNAFGKLDNKSEAGSSTTSYRTGEVSNMKMVVRHKDLNEIVGAIKENFDKAAAAGDQVSEMLEIGRAQLDRSFRQLKKTVYHSSSVL SNLSSSWTSKPPLAVKYRLDTGSLIEPGGPRSLCSTVERLLAWEKKLYDEVKDREGVKIEHEKKLSTLQSQEYKGDEAKLDKTKAAITRLQSLIIVTSQA VSTTSTAIIGLRDSDLVPQLVELCHGFMYMWKSMHQYHEVQNHIVQQVRGLVNQSAKGDSTSELHKQATRDLESAVSAWHSSFCHLIKFQRDFIQSIHGW FKLTLIPVSNDNMNANMEPSDVYAFCDEWKLALDRVPDTVASEAIKSFINVVHVISTKQTEELKIRKRTDTASKELEKKASSLRSLERKFYHSYSMVGIG PPDTGGSDNGQFLDARDPLAEKKSELVACQRRVEDEMLRHAKAVEVTRAMTLNNLQTGLPGVFQALTSFSSLFMEALQLVCNRSYAIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60320			Protein of unknown function (D...		Potri.014G047400 [exp]	0	1
AT3G26932		DRB3	dsRNA-binding protein 3 (.1.2)		Potri.001G325300 [exp]	2.00	0.8614
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116090 [exp]	3.16	0.8545
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.015G074000 [exp]	9.59	0.8046	Pt-TPS8.2
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.004G030600 [exp]	10.90	0.8334
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.007G082400 [exp]	12.24	0.8157
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Potri.013G042600 [exp]	12.96	0.8256	Pt-WRKY39.2
AT1G09460			Carbohydrate-binding X8 domain...		Potri.013G003500 [exp]	16.12	0.8031
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.007G123200 [exp]	20.04	0.8340
AT3G60320			Protein of unknown function (D...		Potri.002G137600 [exp]	24.49	0.8486
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047000 [exp]	25.29	0.8100

Compare expression of checked genes

Potri.014G047400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.