Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44830 888 / 0 Protein kinase superfamily protein (.1) AT5G47750 641 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 600 / 0 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 583 / 0 D6PK D6 protein kinase (.1) AT3G27580 535 / 0 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT5G40030 526 / 0 Protein kinase superfamily protein (.1) AT1G79250 514 / 8e-176 AGC1.7 AGC kinase 1.7 (.1.2) AT3G12690 506 / 2e-172 AGC1.5 AGC kinase 1.5 (.1.2.3) AT3G52890 503 / 3e-166 KIPK KCBP-interacting protein kinase (.1.2) AT2G36350 498 / 2e-164 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G137700 [exp] 1263 / 0 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.016G004900 [exp] 655 / 0 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 645 / 0 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.001G344600 [exp] 595 / 0 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.017G075400 [exp] 537 / 0 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.006G114900 [exp] 538 / 1e-179 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.010G175900 [exp] 525 / 2e-179 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.008G080600 [exp] 521 / 7e-178 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2) Potri.009G146700 [exp] 521 / 2e-174 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042911 [exp] 750 / 0 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10028208 [exp] 739 / 0 AT2G44830 639 / 0.0 Protein kinase superfamily protein (.1) Lus10038753 [exp] 610 / 0 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10016629 [exp] 610 / 0 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 605 / 0 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 566 / 0 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10022534 [exp] 549 / 0 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1) Lus10032185 [exp] 513 / 2e-175 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 508 / 1e-173 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10020571 [exp] 502 / 9e-169 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.014G047500.2 pacid=42763491 polypeptide=Potri.014G047500.2.p locus=Potri.014G047500 ID=Potri.014G047500.2.v4.1 annot-version=v4.1 ATGGAAAGGGTTGCAGAATCGAAGGCTCTTCCTGTGAAACTGCCTGTTGTGAGTCAGGTATCGATAAATGCTTATGTAGTGTCTGGGAGAGAAGCGAGCC AGGCACCCAAGCTGCAGACAGGTCTGGTAAGAGATGTGGCGGGGCGATTTAACGTAAAACAACCCCAAATTACGGACTTTCCTGTGCCTGTTAGACCTTG GAAAGGAAAAGTCTCTGCAATTATTGAAGAAGAGTTGATGCCTGATGTTGTTACTTCTAAGGGCAGTGGTGATTACTTTGATGAAGGTTGCCCTGGTTCT TTCTCCGGGGCAAGTCATCCACCTGAACCTATTGATACAGATCTAATAATGAAAACAGTGTATGTACCAATCGGTCAAAAGAAAGCTGAGCCTCGATGCC TTGTGAAGAGTATGTCTGTGAAGGGGCCTTTTCTAGAAGATCTTTCAATCAGGGTTCCACCCAAAAAACCAAGCCTGGTGGTTCTTTCTCCAGCAGAAAG TTTGGTTGAAGAAACTAATGACTTAGTTGCATTGCCTACTCCATTTTCAGTTCCTCGTGCATCACAAAATACAGAAAACTCTCTCCTTCCACCTGATTCA GAAGAGAACGATTGTGTGTGGGACACCTCATTGCCTCCTAGTGGTGATGTGAGTCCACATAGCAGCATTGACAGTACTGGTGTTGTCACAGCTATGAGCA TTGTCAATAGCTGCGCCAGTACATATCGGAGTGATGCTATTACAAGTGATGGCATGCTTAGTATAGATAGAAACTGTGAGAGCACAAAAGGGAGTGTTAG AGGGGATTCACTTGAAAGTGCAAAGACTAGTGTTAGTCGAGCAAGTGACAGCAGTGGCCTTAGTGATGACAGTAATTGGAGCAATATTACTGGGAGTGCA AATAAGCCTCACAAAGGAAATGATCCTAGGTGGAAGGCTATTCTTGCCATTCGAACACGGGATGGATTTTTGGGTATGAATCACTTTAGATTATTCAAAC GGCTTGGGTGTGGTGACATTGGCAGTGTTTATCTCTCAGAGCTGAGCGGGACTCGGTGTTTTTTTGCAATGAAAGTAATGGACAAGGCTTCCCTTGCAAG CAGGAAAAAGTTGACAAGGGCTCAGACAGAAAGGGAGATTTTGCAGTTGTTGGATCATCCATTTCTGCCGACTTTGTATACTCATTTTGAGACAGACAGA TTCTCATGTTTGGTAATGGAATACTGTCCAGGAGGTGATCTGCACACTCTGAGGCAACGACAACCTGGGAAACATTTTTCTGAGTATGCTGCAAGATTTT ATGCAGCAGAGGTTTTATTGGCACTTGAATATCTTCACATGCTTGGAGTTGTTTACAGAGACTTGAAACCTGAAAATGTCCTTGTCCGTGATGATGGCCA CATAATGCTTTCAGACTTTGACCTTTCCCTTAGATGTGCAGTTTCACCAACCCTGATAAGAACCTCATTTGATTCTGACCCTTCAAAACGAGCTGTTGGT GGTGCATTCTGTGTTCAGCCTGCCTGTATTGAGCCTTCGTCGGCTTGCATCCTACCTTCATGTTTTGTGCCTCGTATCTTCCCTCAGAAAAGTAAGAAAA AAAACAGAAAACCTGGAAAAGATCTTGGGCTGCAAATTAGTTCACTTCCAGAACTCGTGGCAGAACCGACAGCTGCTCGGTCCATGTCCTTTGTTGGTAC CCATGAATACCTGGCCCCTGAAATCATCAAGGGAGAAGGGCATGGCAGTGCAGTTGATTGGTGGACATTTGGCATTTTCTTGCATGAGCTATTATATGGT AAAACCCCATTCAAGGGTTCAGGAAACCGAGCTACCCTGTTCAATGTGGTCGGGCAGCAGCTTAGATTCCCAGATTCACCAGCAACTAGTTATGCTAGTC GAGATTTGATCCGAGGCTTACTGGTGAAGGAACCTCAACACAGGTTAGGGGTGAAGAGGGGCGCAACTGAGATCAAGCAGCACCCTTTCTTTGAAGGTGT GAATTGGGCTCTAATTAGGTGTAGCACGCCACCCGAAGTGCCAAGACCAGTGGAAACTGAGCCGCCTCCTGTCAAGTCTGGGGCAGTCGACAAAATTGGG GTCGGCATTGTTGGCAGCAGCAGCAAAAGGAGGATGGCTGGGACAGACGCGAGGCCTGGGGGTAATTATCTGGACTTTGAGTTCTTTTAG
AA sequence Show only first row Show all	>Potri.014G047500.2 pacid=42763491 polypeptide=Potri.014G047500.2.p locus=Potri.014G047500 ID=Potri.014G047500.2.v4.1 annot-version=v4.1 MERVAESKALPVKLPVVSQVSINAYVVSGREASQAPKLQTGLVRDVAGRFNVKQPQITDFPVPVRPWKGKVSAIIEEELMPDVVTSKGSGDYFDEGCPGS FSGASHPPEPIDTDLIMKTVYVPIGQKKAEPRCLVKSMSVKGPFLEDLSIRVPPKKPSLVVLSPAESLVEETNDLVALPTPFSVPRASQNTENSLLPPDS EENDCVWDTSLPPSGDVSPHSSIDSTGVVTAMSIVNSCASTYRSDAITSDGMLSIDRNCESTKGSVRGDSLESAKTSVSRASDSSGLSDDSNWSNITGSA NKPHKGNDPRWKAILAIRTRDGFLGMNHFRLFKRLGCGDIGSVYLSELSGTRCFFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRTSFDSDPSKRAVG GAFCVQPACIEPSSACILPSCFVPRIFPQKSKKKNRKPGKDLGLQISSLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYG KTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVETEPPPVKSGAVDKIG VGIVGSSSKRRMAGTDARPGGNYLDFEFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44830			Protein kinase superfamily pro...		Potri.014G047500 [exp]	0	1
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Potri.001G131800 [exp]	4.00	0.9230
AT1G76800			Vacuolar iron transporter (VIT...		Potri.005G190800 [exp]	6.55	0.9345
AT5G45540			Protein of unknown function (D...		Potri.007G123100 [exp]	6.63	0.8904
AT1G62400		HT1	high leaf temperature 1, Prote...		Potri.011G022800 [exp]	9.84	0.8493
AT5G19670			Exostosin family protein (.1)		Potri.018G085500 [exp]	10.19	0.8885
AT3G49810			ARM repeat superfamily protein...		Potri.014G014300 [exp]	10.58	0.9050
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.001G252300 [exp]	12.96	0.9177
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.018G006000 [exp]	14.14	0.9049	Pt-VHA1.1
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Potri.006G114200 [exp]	16.61	0.9004
AT3G05327			Cyclin family protein (.1)		Potri.013G023000 [exp]	22.51	0.8695

Compare expression of checked genes

Potri.014G047500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.