Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02120 533 / 0 VAD1 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) AT3G59660 82 / 5e-16 C2 domain-containing protein / GRAM domain-containing protein (.1) AT5G50170 54 / 4e-07 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT1G03370 54 / 4e-07 C2 calcium/lipid-binding and GRAM domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G137800 [exp] 711 / 0 AT1G02120 459 / 6e-158 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Potri.013G127000 [exp] 91 / 9e-19 AT3G59660 867 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Potri.015G083500 [exp] 60 / 4e-09 AT5G50170 1109 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.006G003200 [exp] 52 / 1e-06 AT1G03370 1372 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.016G003900 [exp] 52 / 2e-06 AT1G03370 1378 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028209 [exp] 600 / 0 AT1G02120 536 / 0.0 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Lus10042913 [exp] 565 / 0 AT1G02120 483 / 2e-164 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Lus10025600 [exp] 68 / 2e-11 AT3G59660 761 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Lus10027067 [exp] 64 / 1e-10 AT3G59660 714 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Lus10037679 [exp] 61 / 4e-09 AT5G50170 1097 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10015665 [exp] 61 / 4e-09 AT5G50170 1099 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10001915 [exp] 60 / 5e-09 AT1G03370 1438 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10003910 [exp] 57 / 3e-08 AT1G03370 694 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF02893 [poplar] [flax] GRAM GRAM domain CL0209 [poplar] [flax] Bet_v_1_like PF16016 [poplar] [flax] VASt VAD1 Analog of StAR-related lipid transfer domain
Representative CDS sequence Show only first row Show all	>Potri.014G047600.6 pacid=42763062 polypeptide=Potri.014G047600.6.p locus=Potri.014G047600 ID=Potri.014G047600.6.v4.1 annot-version=v4.1 ATGGCAGCAGTTGCATCCGCAAGCGGAGGAGAGAGGCCTGACACGTCGCCAGCGATGGATGTTCTCTCTTCAAAATCAGCAACAGACGCCGCGTCTGACT CTTCGTGTTCTTCTTTCGCTACCGAGACGCCTGATCTCAATGATCACTCAAATATTTCTGCTAGTCCTAGCCGTGAAGTCGATCCTCACTCACAGGCTTC AGCGAGGAGTGAAGAGTATAGGCAACTGTTTCGTCTTCCAACGGAGGAAGTGCTCATACAAGACTTTAATTGTGCATTCCAGGAGAGTATTCTTCTTCAG GGGCATATGTACCTTTTTGTACATTACATTTGCTTTTATTCCAACATATTTGGATTTGAGACAAAGAAAATAATCCCCTTCTATGAAATTACGGATGTAA AAAGAGCGAAGACAGCTGGGATCTTCCCTAATGCTATAGAAATTTGTGCTGGAGGAAAGAAGTACTTCTTTGCATCATTCCTTTCTCGCGATGAAGCTTT GAAGCTCATCATTGATGGATGGTTACAACACGGTAATGGTTCCAATTTGATCACAGAACAACAGGATTCAATTTCTGTAACCAGTAACCTAGATAATGGA CTTGTTGTAACTGAAAAGGTGAATAACTTCAAGCAAGTCAGTGAATTAGATTCCCCTGACAGGCAAATGGCTACTGCCCCTTCACCTGATTATAAGATTT CAGCATCCGATGAAAATGGCACTGTCTCAATAACACAGATACAAGTAGCTGATGAAGTGGAACAGGATGTTGAGCTAGTTAGAAATACCGACTCTTTATC TTCAACAACTTTGGCATGGAATGTGGAAAATTTTGAAGCACCTCAGAGACGTGAATCTTTTAAAGAAGTTGGAGAGACGAAGTTTCTGATAAAGGTAGAG GAGTTCTTTAATTTGTTCTTTTCAGATGAAGCTGCTAGCTTTGTTGAATCTTTCCATAGTAGATGTGGAGATAAAGAATTCAGGTGCTCTTTATGGTACC CAAATGAGGAATTTGGGCATGCCCGTGATGTGTCTTTTCAGCATCCTATAAAAATATATTTTGGTGCGAAATTTGGCAGCTGCCAGGAGGTCCAGAAATT TCGAGTCTACAGAAACAGCAATCTGGTTATCGAGACATCACAACAGATCAGTGACGTCCCTTTTGGAGATTGTTTTTGCGTTGAGGGACTATGGGATGTG ACTAGAGATGGCGATGGATCAAATGAAGGCTGCATTTTGCGGATATATGTGGATGTTGTATTCAGCAAGAAAATTATTTTTAAAGGTAAGATAGTGCACT CTACTGTGGAAGAATGTCGAGAAGCTTATGCAATATGGATAAACATGGCACATGAATTGTTGAAGCAGAAGAACCTTGAAAAACAAGCAGAGGCAGGGCC GACTCTCAGCATGATTCATGAGGAAGAAGTTCATTCTGAAAGAGAAGTGGAGACTGGAGAAGCTTCAGAAAACTCTTACAAGCCAAGAGGGCATGTGAGG ATGCAGCAGGTGTCTAGTTCTGTGGCTGTTAGTCAACAGGCAGATGATCTTGTGCAGGGAAATTTTACAAATGCTACATCCATTGCATCTTCGCTAGGAG AATATGTGACAAAGCTCTTTTCGTTTTTTAAAAGCCAGAGCCAAATTTCCCTAGTCTTAGTTATTGCATTTATTGTGATCATCCTGATGCAGGTGAGCAT CCTCGTGCTATTGAACAGACCACAAACTGTCCACGTGGCTTCTCCAGAATACTACATGGGTGGCCTGCGAGCTGGGGCTGGTGAAAAATCAGCTGAAGCT GTGGCTTGGTTGGAGAGGCGGACGCACCACCTTAAAGATGAGATGTTTATGGTTGAGGCTAAGCTAGAGAGGTTGCAGCAGGAGCACTCATGGTTGAAAT CACAGTTGAAAAACCTTGATAATCTTGAAAAACATAAATAA
AA sequence Show only first row Show all	>Potri.014G047600.6 pacid=42763062 polypeptide=Potri.014G047600.6.p locus=Potri.014G047600 ID=Potri.014G047600.6.v4.1 annot-version=v4.1 MAAVASASGGERPDTSPAMDVLSSKSATDAASDSSCSSFATETPDLNDHSNISASPSREVDPHSQASARSEEYRQLFRLPTEEVLIQDFNCAFQESILLQ GHMYLFVHYICFYSNIFGFETKKIIPFYEITDVKRAKTAGIFPNAIEICAGGKKYFFASFLSRDEALKLIIDGWLQHGNGSNLITEQQDSISVTSNLDNG LVVTEKVNNFKQVSELDSPDRQMATAPSPDYKISASDENGTVSITQIQVADEVEQDVELVRNTDSLSSTTLAWNVENFEAPQRRESFKEVGETKFLIKVE EFFNLFFSDEAASFVESFHSRCGDKEFRCSLWYPNEEFGHARDVSFQHPIKIYFGAKFGSCQEVQKFRVYRNSNLVIETSQQISDVPFGDCFCVEGLWDV TRDGDGSNEGCILRIYVDVVFSKKIIFKGKIVHSTVEECREAYAIWINMAHELLKQKNLEKQAEAGPTLSMIHEEEVHSEREVETGEASENSYKPRGHVR MQQVSSSVAVSQQADDLVQGNFTNATSIASSLGEYVTKLFSFFKSQSQISLVLVIAFIVIILMQVSILVLLNRPQTVHVASPEYYMGGLRAGAGEKSAEA VAWLERRTHHLKDEMFMVEAKLERLQQEHSWLKSQLKNLDNLEKHK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Potri.014G047600 [exp]	0	1
AT5G62760			P-loop containing nucleoside t...		Potri.015G064600 [exp]	11.22	0.6985
AT2G32970			unknown protein		Potri.014G158200 [exp]	12.72	0.6765
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.001G173900 [exp]	13.71	0.6982
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.015G092100 [exp]	18.65	0.6824
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Potri.012G075100 [exp]	27.38	0.6123	Pt-PI3.1
AT5G15270			RNA-binding KH domain-containi...		Potri.017G085500 [exp]	28.37	0.6088
AT1G10350			DNAJ heat shock family protein...		Potri.010G035000 [exp]	28.98	0.5208
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.004G210200 [exp]	29.83	0.6566
AT2G32970			unknown protein		Potri.002G224900 [exp]	36.48	0.6516
AT3G14720		ATMPK19	ARABIDOPSIS THALIANA MAP KINAS...		Potri.001G381300 [exp]	37.94	0.5686	Pt-TDY1.2

Compare expression of checked genes

Potri.014G047600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.