Plant FIBer expression Database

Potri.014G048100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.014G048100.3 pacid=42762644 polypeptide=Potri.014G048100.3.p locus=Potri.014G048100 ID=Potri.014G048100.3.v4.1 annot-version=v4.1
ATGAGGTCCGGACAACACTGGAGCATGATAATTAAGCAAGCTATGGAAGCCAACACGATCGAGCTGGATCCATCTGGCCAAGAACTCGAAGGCCGCAGAA
CTATCGCAGGGGAGATCTCATCCGTGAATCATCGAACACCCTGCCCATCAGCTCCACCTATAGAAGGAAGAGTTAAAAGCAATGATCAGAAAAGACAAAG
CAAGAGCGAAATTGATAAGAGATACAACGAGAACAGGAAGCAAAAGGAGGATGAGATTATGAAAGAGCTCGAAAGCCTGGACAAAATTTCTGGTGAATTA
GAGCGTGAAAATGACAAGTTAGAATGGCAAGAAAATCAGTTGGAGGTCACTGTATATGAGGAATATAGAAAAATTGTTAGCCTGTTGGAGGACAATAATG
CAGGACAAAATACTGATGTGCAGGGGGCAAGCGCGCATGCCGGTTTTCCAGATGCAAATGCTGATATCAATACTTCTGGAGAAATATCAATGGGTCATGA
TGGGCTTAATGGGCTTAAACGAGAAATGAACCAAGCCCCGATCACGAGCAATGCAGGTACTTTCTCTAGAGAGAACGCATCCATGAATCTTCAACTTGCA
GGAAGTTCTGGCTTAACTGATATGCGAGAAAAGAAAAGGATAGCTGACAAAAAATGTCGTGAAAAAAAGAAGCGTAAGATAAATGAAGCCCAGGAAAGGA
TTAAAGAACATCAAAGAAAAAATCATAAGCTGATGTTACAGAAAGTCAAATCAAAGGCAAAAGCAACTCAGTTGCAAAAACAGCTCGCTCAATATCGCAA
CATCAGTGCGCTGATGACTTCCAAAAATGCTAGAAGAAATGCTCTGCTGGAACAGCTGGTTTTGAATGATCGTGTGCTGCAAAACTCTGGCCAGGGAAGC
ACACCTTTCAACACACAGTTGCAAAACACCGGTCAGGGAAGCACATCTTTCAGCACACAGCTGCCATGCTTTGATATAGGGGATCAGGGAAACACATCTT
TCCACGAGGATTTGAACTGGTTCCTGGACGGGTACAATGCCTCAGTCGAACGTCATAAACCGGAGATAGAATTGGTTGAGGTGGCTGCAATGAGGGCAGC
GCACGACCCAGAGTTGGAGAACGAAAGGCAGTCGCTTGTTGATCCGGTCTTTGATGTTGATGACTTGTTAGTCATGTTTTGA
AA sequence
>Potri.014G048100.3 pacid=42762644 polypeptide=Potri.014G048100.3.p locus=Potri.014G048100 ID=Potri.014G048100.3.v4.1 annot-version=v4.1
MRSGQHWSMIIKQAMEANTIELDPSGQELEGRRTIAGEISSVNHRTPCPSAPPIEGRVKSNDQKRQSKSEIDKRYNENRKQKEDEIMKELESLDKISGEL
ERENDKLEWQENQLEVTVYEEYRKIVSLLEDNNAGQNTDVQGASAHAGFPDANADINTSGEISMGHDGLNGLKREMNQAPITSNAGTFSRENASMNLQLA
GSSGLTDMREKKRIADKKCREKKKRKINEAQERIKEHQRKNHKLMLQKVKSKAKATQLQKQLAQYRNISALMTSKNARRNALLEQLVLNDRVLQNSGQGS
TPFNTQLQNTGQGSTSFSTQLPCFDIGDQGNTSFHEDLNWFLDGYNASVERHKPEIELVEVAAMRAAHDPELENERQSLVDPVFDVDDLLVMF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.014G048100
[exp]
0 1
AT1G34370 C2H2ZnF STOP1 sensitive to proton rhizotoxic... Potri.013G114600
[exp]
10.39 0.8690
AT1G75800 Pathogenesis-related thaumatin... Potri.001G221700
[exp]
15.49 0.8598
AT1G18390 Protein kinase superfamily pro... Potri.010G120800
[exp]
15.49 0.8447
AT1G10155 ATPP2-A10 phloem protein 2-A10 (.1) Potri.015G120200
[exp]
16.97 0.8432
AT2G46870 B3 NGA1 NGATHA1, AP2/B3-like transcrip... Potri.014G107200
[exp]
17.72 0.8825
AT1G75800 Pathogenesis-related thaumatin... Potri.001G222100
[exp]
18.97 0.8507
AT5G58660 2-oxoglutarate (2OG) and Fe(II... Potri.001G278200
[exp]
21.44 0.8681
AT2G19130 S-locus lectin protein kinase ... Potri.013G149500
[exp]
24.00 0.8668
AT1G75800 Pathogenesis-related thaumatin... Potri.001G221400
[exp]
25.09 0.8584
AT1G76390 PUB43 plant U-box 43, ARM repeat sup... Potri.014G102000
[exp]
29.74 0.8143

Potri.014G048100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.