Plant FIBer expression Database

Potri.014G049100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G049000
[exp]
117 / 4e-32 ND /
Potri.014G013800
[exp]
72 / 1e-16 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.014G049100.4 pacid=42762353 polypeptide=Potri.014G049100.4.p locus=Potri.014G049100 ID=Potri.014G049100.4.v4.1 annot-version=v4.1
ATGGCAGCTCCATCTGAACTTGTCGGAGGTAATCAGAACGATCAAGCTGCCCAACCATCTGCTTCTAATCAGAACAATCAACTTGTTCAACTATCTGCTG
ATAAAAATAAAAAAAGAAAGAAACGGGAAGCTGACAAGAAATTTCGTGATGGAAAAAAGCAAAAGACAGAGGACATGCTGAAACAGAACGAAAAGCTGAA
AGCAGATAATGCTGAGTTGGAGAAAAAACTTGCCTACACGAATGGAAAACTGGAACAATTGAAAGAGGACATGGAGCAAACTAGAGAAACTAGTAGGATA
CAGAAGCAGATGGTGGATACACAATATAATATAATCAACATGCTTCGACAACATTTGCAGCTCCCATTTGAAATGAATGAATTTGACACTGGAGCGACAG
GGCCACCTATTCATCATCCACCAGAAGGCCCGGCCATTGAAGAGTCATCGGGGCTGCCTCAATCATCTCCCCTTCAAGGATTGGCACATCTCCCATTTGG
AATGACTCAGGAAAGCATTCTTGGCACTCAAGAGGCATGGCTACCTGTTCATCACCCACCAGCTTTTCAGCCAGGAACAACAATGGGGTCAGGGAGACCC
GGCCATTGA
AA sequence
>Potri.014G049100.4 pacid=42762353 polypeptide=Potri.014G049100.4.p locus=Potri.014G049100 ID=Potri.014G049100.4.v4.1 annot-version=v4.1
MAAPSELVGGNQNDQAAQPSASNQNNQLVQLSADKNKKRKKREADKKFRDGKKQKTEDMLKQNEKLKADNAELEKKLAYTNGKLEQLKEDMEQTRETSRI
QKQMVDTQYNIINMLRQHLQLPFEMNEFDTGATGPPIHHPPEGPAIEESSGLPQSSPLQGLAHLPFGMTQESILGTQEAWLPVHHPPAFQPGTTMGSGRP
GH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.014G049100
[exp]
0 1
AT5G63050 EMB2759 embryo defective 2759 (.1.2) Potri.012G088600
[exp]
5.29 0.8893
AT1G77850 ARF ARF17 auxin response factor 17 (.1) Potri.002G089900
[exp]
5.29 0.8840
AT1G31410 putrescine-binding periplasmic... Potri.003G105100
[exp]
6.00 0.8712
AT3G48280 CYP71A25 "cytochrome P450, family 71, s... Potri.012G089900
[exp]
6.16 0.8438 CYP71AP2v1
Potri.006G028500
[exp]
10.67 0.9004
AT5G20260 Exostosin family protein (.1) Potri.006G064800
[exp]
10.90 0.8655
AT5G39410 Saccharopine dehydrogenase (.... Potri.004G126100
[exp]
10.95 0.8862
AT1G27100 Actin cross-linking protein (.... Potri.008G193900
[exp]
10.95 0.8676
AT4G14910 HISN5B, IGPD HISTIDINE BIOSYNTHESIS 5B (.1.... Potri.010G087600
[exp]
11.13 0.9095
AT1G79000 ATHAC1, ATHPCAT... ARABIDOPSIS THALIANA P300/CBP ... Potri.019G036800
[exp]
12.44 0.8864

Potri.014G049100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.