Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48110 1636 / 0 EDD1 EMBRYO-DEFECTIVE-DEVELOPMENT 1, glycine-tRNA ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028211 [exp] 1694 / 0 AT3G48110 1564 / 0.0 EMBRYO-DEFECTIVE-DEVELOPMENT 1, glycine-tRNA ligases (.1) Lus10042915 [exp] 1598 / 0 AT3G48110 1479 / 0.0 EMBRYO-DEFECTIVE-DEVELOPMENT 1, glycine-tRNA ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF02091 [poplar] [flax] tRNA-synt_2e Glycyl-tRNA synthetase alpha subunit CL0040 [poplar] [flax] PF02092 [poplar] [flax] tRNA_synt_2f Glycyl-tRNA synthetase beta subunit
Representative CDS sequence Show only first row Show all	>Potri.014G049200.1 pacid=42763054 polypeptide=Potri.014G049200.1.p locus=Potri.014G049200 ID=Potri.014G049200.1.v4.1 annot-version=v4.1 ATGGCAACCCTCGCGCTCCCGCTAGTCATATCCGTTTTAAAACCCCAATTCACCCGCCTCTTCCTCTTCCGCTCCCCCGCCACCGTTGTCGGAAGGCCAA ACGCTAACCGCTTTTTTCTCAATCGCCACCGCCCCCGCCCCCGCCACTTCACTAAAACCACCGCCTCCGCTATTAGTACCAATTCTTCTATTCAACAGCA TTCCTCAACAAACCCTTACAATGAGCCTCAAAACACCTCTGTCCCTACTTTCCAACAAGCAATTCAGCGACTCCAGGAATATTGGGCTTCAGTTGGATGT GCAGTGATGCAGTGTAGCAATACAGAGGTTGGAGCCGGGACTATGAATCCTCTTACATTCTTAAGAGTTCTTGGTCCTGAACCATGGAATGTGGCGTACG TGGAGCCTAGTATTCGCCCAGATGATAGTCGTTATGGGGAAAACCCAAACAGACTACAGCGTCACACACAGTTTCAGGTTATACTAAAACCTGATCCTGG AAATTCACAAGACCTATTTATTCGAAGTCTCTCTGCGTTAGGTGTTGATGTTAATGCACATGATATACGATTTGTGGAGGACAATTGGGAGAGCCCGGTA CTTGGCGCTTGGGGTTTGGGCTGGGAAATCTGGATGGATGGGATGGAGATCACTCAATTCACCTACTTTCAGCAGGCTGGAAGTCTTCAACTGTCGCCCA TATCTGTTGAAATCACTTACGGCCTCGAGCGCATCCTCATGTTGCTTCAGGGAGTTGACCATTTTAAGAAAATTCGATATGCTGATGGCATTACATATGG GGAGTTGTTCTTGGAAAATGAGAAGGAAATGAGTGCGTATTATTTAGAACATGCCAGTGTTCATCATCTTCAAAAGCACTTTGATTTTTTTGAGGAAGAA GCCCGTTCCTTGCTTGCCTCTGGTCTTCCAATCCCTGCGTATGATCAGCTACTGAAGACCTCTCATGCTTTCAATATCTTAGATTCTAGAGGTTTTGTCG GGGTAACAGAGCGTGCTCGATATTTTGGTCGAATGCGTAGCTTAGCTCGTCAATGTGCTCAACTTTGGTTAAAGACCAGGGAATCCCTTGGACATCCTCT GGGTACTGTTTCTGAACCTGCTCAACTTGTATCTGCTAAAGAGCTTTTGGAGGCAGCTGTCAAAAAGGTGCATGATGAGCAAAGGTTTTTTGTTCTTGAA ATTGGTACTGAAGAGATGCCTCCTCAAGATGTAGTTCATGCAGGGCAGCAACTCAAAGATTTAGTGTTGCAATTGCTAGAGAAACAACGATTGAGTCATG GCAAAGTTGAAGCTTTTGGTACTCCTCGCCGACTAGTGGTTTGTGTTGAGAGTCTTTCCACTAAGCAAGCTGAGATTGAGCTTGAGGTTCGAGGACCTCC TGTTTCAAAGGCCTTTGATCAAGAAGGAAATCCTACAAAGGCTGCTGAGGGTTTTTGTCGTAGATACAACATATCATTGGACTCATTGTTTAGAAAGGTT GATGGCAAAACGGAGTATGTACATGCCCATGTAAGGGAGACTGCACGATTTGCTTTGGAGATTTTATCTGAAGATTTGCCCAGTACCATCAGTAAAATAT CATTCCCAAAGTCAATGCGCTGGAACTCTCAGGTCATGTTCAGCAGACCAATTCGTTGGATTATGGCCTTGCATGGAGATGTGGTTGTTCCATTTGCATT TGCTGGAGTTTTGAGTGGGAACCTATCTTATGGCCTTCGTAATACCCCCTCAGCTACTGTTCAGGTTGAAAGTGCAGAATCTTATGAAGGTGTAATGCAA AATGCTGGAATTAATATTGAAATTGAGGGTCGAAAACGAAGCATCTTGGAGCAATCTAATGAATTAGCAAAAAGTGTCAAAGGACGCATCCTTATTCAGG AAAGCTTACTTAATGAGGTTGTCAATCTTGTTGAGGCACCAGTTCCTGTGCTTGGGAAGTTTAAAGAGTCCTTCTTGGAACTTCCAGAAGATCTTTTAAC AATGGTCATGCAAAAACACCAGAAGTATTTCGCCATAACTGATGATAGTGGAAGGCTGCTGCCATTTTTTATTGCTGTGGCAAATGGAGCAATCAATGAA ACCGTGGTAAAGAAAGGGAATGAAGCTGTGCTTAGAGCTCGCTATGAAGATGCAAAATTTTTCTATGAGATGGATACACGCAAGAAGTTCTCCGAGTTCC GAAATCAACTAGATGGGATTCTTTTTCATGAAAAGTTAGGAACAATGCTTGACAAGATGATGCGCGTTGAAAACATGATCACCAAACTAACTGTGGAGTT GGGAGTTAACGAAGATGTGATTCAGGTTGTCCAGGATGCGGCATCGCTTGCTATGTCAGATCTTGCTACTGCTGTTGTGACAGAATTCACTGCCCTTTCA GGAATAATGGCACGCCATTATGCTCTTAGGGAAGGCTATTCAGCACAGATTGCTGAGGCCTTGCTAGAAATTACACTTCCTCGATTTTCTGGAGATATGG TTCCAAAAACTGATGCAGGGATAGTTTTGGCAATTGCTGACAGATTGGACAGCCTTGTTGGCTTATTTGCTGCTGGTTGTCAACCTAGTTCCGCTAATGA CCCATTTGGCTTGCGAAGAATCTCTTATGCTCTAGTCCAAATATTGGTGGATAATGATAAAAATTTGGATTTGGTTCGTGCTTTAAGACTTGCTGCTGAC GTGCAACCCATCAAAGCAGATGTCTCAATGATTAATGATGTACATCTATTTGTTACTCGAAGATTGGAGCAATTCCTGGTTGACAAGGGAATAAGGCCAG AAATTGTTCGTTCTGTTCTTGCAGAACGTGCAAGTTCCCCTTGTCTGGCAGCGAAGACAGCATATAAAATGGAGGCTTTGTCAAGAGAAAATCTTTTCCC TAAGGTAGTTGAAGCATATTCTCGTCCAACAAGAATTGTCCGTGGCAAGGATGTGGACACTGATATGAAGGTGGATGAGGCTGCGTTTGAAACAGATGAA GAGAGAGCTTTATGGAGCACTTTCACGTCCACTAAAAGCAAAATTTATCCTGGCATTGAGATTGATGAGTTTGTTGAGATATCCTCAGAGCTACTACAGC CGCTTGAGGATTTCTTCAATAATGTTTTTGTCATGGTGGAAGATGAAAGAATCAGGAAGAACAGGCTTGCTCTGCTAAATAAAATTGCAGACCTGCCTAG AGGCATAGCAGATCTTTCAGTTTTACCAGGATTTTAG
AA sequence Show only first row Show all	>Potri.014G049200.1 pacid=42763054 polypeptide=Potri.014G049200.1.p locus=Potri.014G049200 ID=Potri.014G049200.1.v4.1 annot-version=v4.1 MATLALPLVISVLKPQFTRLFLFRSPATVVGRPNANRFFLNRHRPRPRHFTKTTASAISTNSSIQQHSSTNPYNEPQNTSVPTFQQAIQRLQEYWASVGC AVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVDVNAHDIRFVEDNWESPV LGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPISVEITYGLERILMLLQGVDHFKKIRYADGITYGELFLENEKEMSAYYLEHASVHHLQKHFDFFEEE ARSLLASGLPIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRESLGHPLGTVSEPAQLVSAKELLEAAVKKVHDEQRFFVLE IGTEEMPPQDVVHAGQQLKDLVLQLLEKQRLSHGKVEAFGTPRRLVVCVESLSTKQAEIELEVRGPPVSKAFDQEGNPTKAAEGFCRRYNISLDSLFRKV DGKTEYVHAHVRETARFALEILSEDLPSTISKISFPKSMRWNSQVMFSRPIRWIMALHGDVVVPFAFAGVLSGNLSYGLRNTPSATVQVESAESYEGVMQ NAGINIEIEGRKRSILEQSNELAKSVKGRILIQESLLNEVVNLVEAPVPVLGKFKESFLELPEDLLTMVMQKHQKYFAITDDSGRLLPFFIAVANGAINE TVVKKGNEAVLRARYEDAKFFYEMDTRKKFSEFRNQLDGILFHEKLGTMLDKMMRVENMITKLTVELGVNEDVIQVVQDAASLAMSDLATAVVTEFTALS GIMARHYALREGYSAQIAEALLEITLPRFSGDMVPKTDAGIVLAIADRLDSLVGLFAAGCQPSSANDPFGLRRISYALVQILVDNDKNLDLVRALRLAAD VQPIKADVSMINDVHLFVTRRLEQFLVDKGIRPEIVRSVLAERASSPCLAAKTAYKMEALSRENLFPKVVEAYSRPTRIVRGKDVDTDMKVDEAAFETDE ERALWSTFTSTKSKIYPGIEIDEFVEISSELLQPLEDFFNNVFVMVEDERIRKNRLALLNKIADLPRGIADLSVLPGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Potri.014G049200 [exp]	0	1
AT1G68890			magnesium ion binding;thiamin ...		Potri.010G135500 [exp]	1.41	0.8754
					Potri.003G044301 [exp]	6.00	0.8365
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G062800 [exp]	6.92	0.8094
AT3G59780			Rhodanese/Cell cycle control p...		Potri.019G098001 [exp]	8.36	0.8182
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Potri.002G207200 [exp]	12.96	0.8219
AT1G18870		ATICS2, ICS2	ARABIDOPSIS ISOCHORISMATE SYNT...		Potri.012G070000 [exp]	14.14	0.8355
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Potri.018G016600 [exp]	17.88	0.7954
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Potri.018G103700 [exp]	20.12	0.7989
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Potri.002G252800 [exp]	21.23	0.8125	Pt-PIL5.1
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Potri.006G049900 [exp]	23.36	0.7630

Compare expression of checked genes

Potri.014G049200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.