Plant FIBer expression Database

Potri.014G049300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16830 159 / 2e-46 Hyaluronan / mRNA binding family (.1.2.3)
AT4G17520 144 / 2e-39 Hyaluronan / mRNA binding family (.1)
AT5G47210 100 / 2e-23 Hyaluronan / mRNA binding family (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G138300
[exp]
246 / 1e-78 AT4G17520 133 / 1e-35 Hyaluronan / mRNA binding family (.1)
Potri.003G081600
[exp]
174 / 7e-51 AT4G17520 180 / 2e-53 Hyaluronan / mRNA binding family (.1)
Potri.001G153000
[exp]
160 / 1e-45 AT4G17520 128 / 1e-33 Hyaluronan / mRNA binding family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040157
[exp]
132 / 4e-35 AT4G17520 181 / 1e-53 Hyaluronan / mRNA binding family (.1)
Lus10004362
[exp]
132 / 6e-35 AT4G17520 183 / 1e-54 Hyaluronan / mRNA binding family (.1)
Lus10000599
[exp]
120 / 3e-32 AT4G17520 170 / 7e-52 Hyaluronan / mRNA binding family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04774 HABP4_PAI-RBP1 Hyaluronan / mRNA binding family
Representative CDS sequence
>Potri.014G049300.8 pacid=42762486 polypeptide=Potri.014G049300.8.p locus=Potri.014G049300 ID=Potri.014G049300.8.v4.1 annot-version=v4.1
ATGGCGATGATCAATCCTTTTGATTTATTGGTTGATGACGCCGAGGATCCATCTCTCATCGCTGCTCTAAAGCCGGTGGTTTCTCCTCCCGCCGCAGCGG
CTGCTAAGAAAGGTCCAGCTCAGACTCAACCTAAACCCGCTCCTGCTGCTAAGCTCCCTTCCAAGCCTCTTCCTCCTTCACAGGCTGTGAGGGAAGCGAA
GACTGAAGGTGGGAGAGGAGGAGGCCGAGGTGGTGGTGGAGGAAGAGGATATGGGCGTGGTCGTGGGGGATATAATAGGGATTTCAACAACAATGAGAGT
TCATTCGGTAACTCTGGAGCACCAACTGTTCAAGGTGCTGCTGAAGATGGAGATACTGCAAAGACCTTTGAATCACGTGGATATGGTGGACCTCGTGGTG
GTGGTTTCCGTGGTGGCCGTCGTGGGGGTTTTGGTAATGAAGAAGTTGGTGAAGGAGAGCGTCCTCGTCGAACTAATGAACGTTGGAGTGGGACTGGACG
TGGAAATGAGATGAAGCGTGAAGGCTCTGGTCGTGGGAACTGGGGAACTCCGACTGATGAGCTTGCCCTGGTAACTGAGGAAGCTGCCAATGAGGGTGAG
AAGAATTTGGGTGATGACAAGCCTGTGGAGGAAGCAGCAGCAGATAGGAAAAAGGAGAACCCTGCTAATGAACCTGAAGAGAAAGAACCAGAGGATAAGG
TGATGACTCTTGAAGAGTATGAGAAGGTGCTGGAAGAGAAGAGGAAGGCCCTGCAGGCACTTAAGACAGAAGAAAGAAAGGTCGACACTAAAGAGTTTCA
ATCCATGCAGCAGCTTTCAAACAAGAAGGAAAACAACGATGTCTTTATTAAATTGGGTTCTGACAAGGATAAGCGGAAAGAGGCGTATGAGAAAGATGAG
AAAGCTAAGAAGTCTGTCAGCATTAACGAGTTCTTGAAGCCTGCTGAAGGGGAGAGGTACTATGGCTCAGGCAGTCGGGGTCGTGGCCGTGGCCGTGGAG
CAAGAGGTTTTGGCAATAGAGATGGAATGAGCAGCGGTTTTGGCAATAGAGACGGAATGAGCAGCGTGCCAGCCCCTTCCATTGAAGATCCCGGACAATT
CCCAACCCTGGGTGGCAAATGA
AA sequence
>Potri.014G049300.8 pacid=42762486 polypeptide=Potri.014G049300.8.p locus=Potri.014G049300 ID=Potri.014G049300.8.v4.1 annot-version=v4.1
MAMINPFDLLVDDAEDPSLIAALKPVVSPPAAAAAKKGPAQTQPKPAPAAKLPSKPLPPSQAVREAKTEGGRGGGRGGGGGRGYGRGRGGYNRDFNNNES
SFGNSGAPTVQGAAEDGDTAKTFESRGYGGPRGGGFRGGRRGGFGNEEVGEGERPRRTNERWSGTGRGNEMKREGSGRGNWGTPTDELALVTEEAANEGE
KNLGDDKPVEEAAADRKKENPANEPEEKEPEDKVMTLEEYEKVLEEKRKALQALKTEERKVDTKEFQSMQQLSNKKENNDVFIKLGSDKDKRKEAYEKDE
KAKKSVSINEFLKPAEGERYYGSGSRGRGRGRGARGFGNRDGMSSGFGNRDGMSSVPAPSIEDPGQFPTLGGK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G16830 Hyaluronan / mRNA binding fami... Potri.014G049300
[exp]
0 1
AT4G17520 Hyaluronan / mRNA binding fami... Potri.002G138300
[exp]
1.00 0.8585
AT3G14190 unknown protein Potri.009G072000
[exp]
8.77 0.6835
AT1G56070 LOS1, AT1G56075... LOW EXPRESSION OF OSMOTICALLY ... Potri.007G065600
[exp]
9.79 0.7362 Pt-LOS1.2
AT2G33840 Tyrosyl-tRNA synthetase, class... Potri.010G248900
[exp]
9.94 0.7231
AT2G20580 RPN1A, AtRPN1a 26S proteasome regulatory subu... Potri.007G137200
[exp]
14.00 0.7069
AT2G33340 MAC3B MOS4-associated complex 3B (.... Potri.008G171600
[exp]
26.38 0.6790
AT2G32730 26S proteasome regulatory comp... Potri.017G054400
[exp]
28.98 0.6355
AT1G04870 PRMT10, ATPRMT1... protein arginine methyltransfe... Potri.018G071200
[exp]
30.59 0.6468
AT3G02320 N2,N2-dimethylguanosine tRNA m... Potri.017G099200
[exp]
31.36 0.6486
AT1G19880 Regulator of chromosome conden... Potri.002G026600
[exp]
32.09 0.6983

Potri.014G049300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.