Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60260 434 / 1e-155 ELMO/CED-12 family protein (.1.2.3.4) AT2G44770 431 / 9e-155 ELMO/CED-12 family protein (.1) AT1G67400 295 / 1e-100 ELMO/CED-12 family protein (.1) AT1G03620 280 / 5e-95 ELMO/CED-12 family protein (.1) AT3G03610 266 / 9e-89 ELMO/CED-12 family protein (.1) AT3G43400 181 / 6e-57 ELMO/CED-12 family protein (.1) AT5G21110 40 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G138700 [exp] 501 / 0 AT3G60260 459 / 8e-166 ELMO/CED-12 family protein (.1.2.3.4) Potri.010G060700 [exp] 316 / 5e-109 AT1G67400 419 / 1e-149 ELMO/CED-12 family protein (.1) Potri.008G175301 [exp] 312 / 2e-107 AT1G67400 422 / 6e-151 ELMO/CED-12 family protein (.1) Potri.013G136200 [exp] 251 / 1e-82 AT1G03620 322 / 1e-110 ELMO/CED-12 family protein (.1) Potri.013G069000 [exp] 246 / 2e-81 AT3G03610 441 / 6e-157 ELMO/CED-12 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024285 [exp] 476 / 4e-172 AT2G44770 454 / 1e-163 ELMO/CED-12 family protein (.1) Lus10003841 [exp] 428 / 5e-151 AT2G44770 407 / 2e-142 ELMO/CED-12 family protein (.1) Lus10037017 [exp] 308 / 1e-105 AT1G67400 386 / 2e-136 ELMO/CED-12 family protein (.1) Lus10015790 [exp] 306 / 6e-105 AT1G67400 385 / 4e-136 ELMO/CED-12 family protein (.1) Lus10039805 [exp] 265 / 2e-89 AT1G03620 327 / 3e-114 ELMO/CED-12 family protein (.1) Lus10018574 [exp] 264 / 2e-88 AT1G03620 328 / 7e-114 ELMO/CED-12 family protein (.1) Lus10009523 [exp] 261 / 6e-87 AT3G03610 429 / 4e-152 ELMO/CED-12 family protein (.1) Lus10020344 [exp] 257 / 3e-85 AT3G03610 428 / 1e-151 ELMO/CED-12 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04727 [poplar] [flax] ELMO_CED12 ELMO/CED-12 family
Representative CDS sequence Show only first row Show all	>Potri.014G049800.7 pacid=42764421 polypeptide=Potri.014G049800.7.p locus=Potri.014G049800 ID=Potri.014G049800.7.v4.1 annot-version=v4.1 ATGGACGATAGAGGAGGATCATTTGTGGCTGTGAGGAGGATTTCTCAAGGTCTCGAGCGAGGAAATAATACTTGCCATTCAAGTTCTGCTGAGGTTGTGG CAGGATCAGCAGCCTGGCTTGGCCGTGGTCTTTCCTGTGTTTGTGCACAGAGAAGAGAGAGTGATGCTCGTCCATCATTTGATTTAACCCCTCCACAGGA GGAATGCTTGCAGAGGTTGCAAAGTCGTATAGATGTCGCCTATGATAGTTCAGTTCCTGAGCACCAGGAAGCTTTGAAAGCCTTATGGAATGCTGCCTTT CCTGAAGAAGAACTTCATGGCTTGATATCTGAGCAATGGAAGGAAATGGGTTGGCAAGGAAAGGATCCTTCAACAGACTTTAGGGGTGGTGGTTTTATAT CATTGGAGAATTTGTTGTTCTTTGCTAGGAATTTTCCGACGTCCTTCCAGGATCTTCTTCAAAAGCGAGAAGGTGATCGATCAGTATGGGAATACCCATT TGCTGTAGCTGGTGTGAACATCACTTTTATGCTCATTCAGATGCTTGATCTTGAAGCAGTCAAACCACGCACGCTGGTGGGGGCAACTTTCTTGAAGTTT CTAGAAGAGGATGACTCAGCATTTGACCGTCTCTATTGCATAACGTTCAAGCTAATGGATCATGAATGGCTTGACATGCGCGCTTCATATATGGACTTCA ATGCGGTAATGAAATCCACACGCCGCCAACTAGAGAGAGAGCTCCTGTCTGAAGACATAACACGGCTAGAAGAATTGCCCTCTTACACCCTTCTTACACG ATAG
AA sequence Show only first row Show all	>Potri.014G049800.7 pacid=42764421 polypeptide=Potri.014G049800.7.p locus=Potri.014G049800 ID=Potri.014G049800.7.v4.1 annot-version=v4.1 MDDRGGSFVAVRRISQGLERGNNTCHSSSAEVVAGSAAWLGRGLSCVCAQRRESDARPSFDLTPPQEECLQRLQSRIDVAYDSSVPEHQEALKALWNAAF PEEELHGLISEQWKEMGWQGKDPSTDFRGGGFISLENLLFFARNFPTSFQDLLQKREGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTLVGATFLKF LEEDDSAFDRLYCITFKLMDHEWLDMRASYMDFNAVMKSTRRQLERELLSEDITRLEELPSYTLLTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60260			ELMO/CED-12 family protein (.1...		Potri.014G049800 [exp]	0	1
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Potri.002G034600 [exp]	3.31	0.8084
AT5G28150			Plant protein of unknown funct...		Potri.002G051600 [exp]	6.63	0.8064
AT4G35070			SBP (S-ribonuclease binding pr...		Potri.009G135400 [exp]	10.67	0.7242
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Potri.005G228500 [exp]	10.72	0.7713
AT3G26935			DHHC-type zinc finger family p...		Potri.001G325400 [exp]	14.28	0.7823
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Potri.018G048600 [exp]	14.69	0.8040	Pt-GPA1.1
AT5G50130			NAD(P)-binding Rossmann-fold s...		Potri.012G087800 [exp]	16.97	0.7420
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Potri.015G092800 [exp]	30.59	0.7920
AT5G28150			Plant protein of unknown funct...		Potri.005G210800 [exp]	32.44	0.7917
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Potri.006G123900 [exp]	38.23	0.7779	Pt-PGP1.1

Compare expression of checked genes

Potri.014G049800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.