Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05490 587 / 0 CHR31 chromatin remodeling 31 (.1) AT3G24340 536 / 1e-170 CHR40 chromatin remodeling 40 (.1) AT3G42670 342 / 1e-98 CLSY1, CLSY, CHR38 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) AT5G20420 321 / 3e-91 CHR42 chromatin remodeling 42 (.1) AT2G16390 267 / 7e-75 DMS1, CHR35, DRD1 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT2G21450 264 / 3e-74 CHR34 chromatin remodeling 34 (.1) AT3G19210 144 / 7e-35 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT1G08600 107 / 4e-23 ATRX, CHR20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) AT2G18760 100 / 4e-21 CHR8 chromatin remodeling 8 (.1) AT5G44800 99 / 2e-20 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G073500 [exp] 339 / 4e-97 AT3G42670 1120 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.009G120700 [exp] 280 / 2e-79 AT2G16390 938 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.004G159000 [exp] 214 / 6e-57 AT2G16390 811 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.010G183832 [exp] 191 / 2e-52 AT3G42670 656 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.019G021500 [exp] 110 / 5e-24 AT1G08600 1612 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.013G048500 [exp] 107 / 3e-23 AT1G08600 1603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.001G123400 [exp] 107 / 5e-23 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.003G110100 [exp] 102 / 2e-21 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.005G226500 [exp] 101 / 2e-21 AT2G18760 1362 / 0.0 chromatin remodeling 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011033 [exp] 624 / 0 AT1G05490 590 / 0.0 chromatin remodeling 31 (.1) Lus10003003 [exp] 615 / 0 AT1G05490 579 / 0.0 chromatin remodeling 31 (.1) Lus10040136 [exp] 492 / 2e-156 AT1G05490 430 / 2e-131 chromatin remodeling 31 (.1) Lus10040956 [exp] 355 / 5e-103 AT5G20420 1316 / 0.0 chromatin remodeling 42 (.1) Lus10009840 [exp] 340 / 4e-98 AT5G20420 1283 / 0.0 chromatin remodeling 42 (.1) Lus10041963 [exp] 283 / 5e-80 AT2G16390 1018 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10017973 [exp] 274 / 1e-76 AT2G16390 994 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10042070 [exp] 273 / 1e-75 AT2G16390 833 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10001090 [exp] 248 / 2e-74 AT1G05490 202 / 6e-59 chromatin remodeling 31 (.1) Lus10001091 [exp] 117 / 2e-30 AT1G05490 87 / 4e-21 chromatin remodeling 31 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00176 [poplar] [flax] SNF2_N SNF2 family N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G050200.3 pacid=42764529 polypeptide=Potri.014G050200.3.p locus=Potri.014G050200 ID=Potri.014G050200.3.v4.1 annot-version=v4.1 ATGATGGACTATACATTGCCTATATCTAAAAGGACCAGGCTTAGAGAAGCTGAAGTGTATAAGAAATTGCATGATGAGATTAGGAAAGGGAGAAACCAAG GGAAGGAAAGCAATGCTGCCGCTACCGGGTCAACGAATGGACTTAATGGTGCTCAAGAGGAAAGCGTTGGCGGGTTGTCTTACAAGGGAAGTAAGAGTCC AGTTGTCTTGGATGATAGTGAAGACGATGCCTTTTTGGATGACTGTGAAAAGGGGGGGCTTGAGGAAGGGTTGGATGTTGTTTCCCTTGACGATAGTGAT GATGATGATCAGAGTGAGGGAGTAGAGAGTAAGAGTTTTGACGTTGGTGGTAAGAAGAGTGGGGGAACAGATGTGGGTGGAAGTTGTAGTGGCGTGAAAT CTGATGGAGAGGAGAGTGGGAGATCAAAGGTTCCTCTTCCTCGTTGGCAGAGAATTGTGAACGAGAGTTATAATGGTGATGTTTTTGCGCATGAGAGGAA TGAGGGTGGCGTGTGTTTTTTGTCGAGTGGAATTGGGAATGGAAGTGGTGGGGTCGGTTTGAAGGGGAGGGAGAGTAATGGGGTAGCCGGAAGGACTGAG TTGCGGTCCGGGTTTTGTGAAAAGAAGAAGGATGGTAATGTTGTTGTTGTTGTTGATGATGATGATGATGATGCTTGTATTATTTTGGAAAAGGATGCAG AGGAATTGCAGAGTTCTTCTAGTGGAGAAGAGGAAACCTTTAAAGATGATTCAGATGATGATGATTATAGAGTGGAGTTACCGGAGAGTTTTATGGTTGA GGAGGAAGAGAAAGAAGAGGATGGTGATAGGGAGCAAGGTGAGATGGAATTGAAGAGGAACAAAGTTTATGGAATTGAAGTGTTATGCGACTCTGATATT GGTAAATTTGAGAATAATGATGTCGACATGGATGATTCTCTTTGTGTGGCAAAACGTACCCGATCACACTATAATTTGGAATCGGCTAAGAAGAGAATGA AGCTTGAAACAGTTAGCCGACCACTTTGTGTTGATGAGGAGAAGTTGGATGATAATGGTGACAATGATGAAGATGATACTGAAGCCTATGAAGCAGTTGA TGTTGCTCAGAAAGTTCGGTCTAAGAAAGGAAAAACTAAACCAACAGGAGGGAATGGTGGTGACGTTGATGATGGTGATGAGACTTGTGATCATAAGTCT CAGAGAAGGACAATTGAGTCTAGAGAAGGCAGTAGAGATGAGCATGGGCATGGTGTATGTAGAAGGAAGCCTAGTAAAAGAAGGCGAAAAGAATATGAAG TTGTCAAAATTCTTGCAAATTCCCTTTTTCTGGACCTGGAAGATGTGCCTTTCAAAGAAGAAAGGGAACCACTCGAGGAGCCAGTTCTTCCTCTGAAGTT CACATTTGGAATTGAAGAGTCAAGTCCTCCAGTTAAATCAGAAGAGGAGAAACAATTGGAGGAACTTTGGGCTGACATGGCCTTAGCTCTTTGCTTAAAG GACACCACTGATGATGCAGCGCTGGATGAAAATGAAGATGACGCCCATGAGGTTGAACCTGATACAGTCACCCTTTGTCATCAGGGGAATCACGAGCTTT ATCTTGATGAAGAAATTGGACTTCTATGCAAATATTGCTCTTTTGTGGATTTGGAAATCAAATACTATGTGCCCCCTTTTGATAGATATCCTAGGGGGAA ATCAGCTAGGAGAGACTTTGTGACAATGCAACACAATATCTTCAATGATCTCCATCACCAAGATTCTGGTCATGACACACATCCTGATTATGATCCTTGC ACTCTTGTGCAAGGCACAGTGTGGAACTTAATTCCTGGTATTGGAAAGGGTATGCATGGACATCAGCGTGAAGGCTTTGAGTTTCTGTGGAAAAACATAG CTGGAGGTATTTATCTTGACAAGCTGAAAGAGAATGCTAACTTAAATGGTGGGACAGGATGCATTATATCCCATGCTCCTGGGACTGGGAAAACCCGCCT AACCATAGTGTTTCTCCAGACATATATGCAATTATATCCAACAAGCAGGCCTGTAATAGTTGCTCCTTGTAGCATGCTCCTTACATGGGAAGCAGAGTTT TTGAAGTGGGGGGTTGACATTCCCTTTCACATTATGAACAAGAAAAATCTTTCTGGAAAAGAAAATAGGACAGCTATGGATCTTTTCAGGGAACTTAAAC CTGCAGAGCGTGGTTTAAATGCCATCCGTATGGTGAAATTATATTCTTGGAAAAAGGAGAGGAGTATCCTGGGGATCAGTTACAGACTTTTTGAAGAACT TGTTGGTGAAGAAAAGAGTAAAACCAAAGTATCAGATAAGACTGAAGATGACCAGGTAAGGAAAGTCCTTCTTGAACTTCCTGGTCTTTTAGTCCTTGAT GAAGGACATACACCTCGAAATGACAGGAGTCGTATCTGGAAAGCTTTGTCGAAGGTCCAAACACAAAAACGGATTATACTCTCAGGAACACCCTTCCAAA ATAACTTTGATGAGCTTTATAACACACTGTGCTTGGTAAAGCCTAAATTTGCAGATGAGATCTCGTCCAAACACCATAGAGCTTTTCCTAAAAGGCGTCG TTGCAAGAGAAATACTGATGCGAGAAGGAATTGGGCCTCCTTGACAACTGCGATTGGCAAAGTCACTGATGATAAACTGGAAGCTCAGAGGGTAGAAGAG CTTAGAAAGATGATTTGGCAATTTGTGCATGTACACAAGGGTGGTGTGCTACGAGAAAGACTCCCTGGATTGAGGGACTCTGTGGTTATCTTACAGCCAG TCCATTTGCAGAAGACCCTTCTTGAAAATGTCAAGCAAATTAATGGCCTGGATCATTTTGAGATGGAATATTTGTTGTCTGTGCTTTCTGTACACCCTTC TCTGTTGCCAGAGAAATCAGTTGGAACCCTAGAGTTTAAGTTTGTTGATCGGATGGAGTTAGAAATGCTTAGATCAAAACCTGAGGCTGGAGTCAAAACA AAATTTCTTATGGAACTCATTCGGCTTTGCCAGGCGAGGAATGAGAAAGTTCTGGTGTTCAGTCAATATCTTGAGCCACTGAACTTGGTAATCAAGCAGC TGGAGTCAAATTTCAGTTGGATCCAAGGAGAAGATATATTATATATGCATGGAAAGCTTAAAATAGATGAACGTCAAATATTGATTAAGCATTTTAACAA TGCAAATAGTAACGCAAAAGTGTTGCTCGCATCAACTAGAGCTTGTTCTGAAGGGATAAATCTTGTTGGTGCTTCAAGAGTGGTTTTGCTTGATGTTTTG TGGAACCCATCGGTGGAAAGGCAAGCCATCAGCCGCGCCTACAGGCTAGGGCAAGAGAAAGTTGTCTATATTTATCATCTCATTACTTCAGGAACAATGG AAGAGGAGAAGTATTTTTGTCAAGTTGAGAAGGAGCGATTGTCAAACCTAGTGTTTGATTGCACAAACAGAAGTAGCAATCATCAAAAGGGCGTGTTTGA TATCGCTGAAGACAAAAAGGACAAAATTCTGGAAGAAATGGTTCAGCATGACAAACTTAAACTCATGTTTAAAAGAATCGTATACCAACCAAAAGATACT AATATAGTCAAATCTTTCGACTTGGATTTGTAA
AA sequence Show only first row Show all	>Potri.014G050200.3 pacid=42764529 polypeptide=Potri.014G050200.3.p locus=Potri.014G050200 ID=Potri.014G050200.3.v4.1 annot-version=v4.1 MMDYTLPISKRTRLREAEVYKKLHDEIRKGRNQGKESNAAATGSTNGLNGAQEESVGGLSYKGSKSPVVLDDSEDDAFLDDCEKGGLEEGLDVVSLDDSD DDDQSEGVESKSFDVGGKKSGGTDVGGSCSGVKSDGEESGRSKVPLPRWQRIVNESYNGDVFAHERNEGGVCFLSSGIGNGSGGVGLKGRESNGVAGRTE LRSGFCEKKKDGNVVVVVDDDDDDACIILEKDAEELQSSSSGEEETFKDDSDDDDYRVELPESFMVEEEEKEEDGDREQGEMELKRNKVYGIEVLCDSDI GKFENNDVDMDDSLCVAKRTRSHYNLESAKKRMKLETVSRPLCVDEEKLDDNGDNDEDDTEAYEAVDVAQKVRSKKGKTKPTGGNGGDVDDGDETCDHKS QRRTIESREGSRDEHGHGVCRRKPSKRRRKEYEVVKILANSLFLDLEDVPFKEEREPLEEPVLPLKFTFGIEESSPPVKSEEEKQLEELWADMALALCLK DTTDDAALDENEDDAHEVEPDTVTLCHQGNHELYLDEEIGLLCKYCSFVDLEIKYYVPPFDRYPRGKSARRDFVTMQHNIFNDLHHQDSGHDTHPDYDPC TLVQGTVWNLIPGIGKGMHGHQREGFEFLWKNIAGGIYLDKLKENANLNGGTGCIISHAPGTGKTRLTIVFLQTYMQLYPTSRPVIVAPCSMLLTWEAEF LKWGVDIPFHIMNKKNLSGKENRTAMDLFRELKPAERGLNAIRMVKLYSWKKERSILGISYRLFEELVGEEKSKTKVSDKTEDDQVRKVLLELPGLLVLD EGHTPRNDRSRIWKALSKVQTQKRIILSGTPFQNNFDELYNTLCLVKPKFADEISSKHHRAFPKRRRCKRNTDARRNWASLTTAIGKVTDDKLEAQRVEE LRKMIWQFVHVHKGGVLRERLPGLRDSVVILQPVHLQKTLLENVKQINGLDHFEMEYLLSVLSVHPSLLPEKSVGTLEFKFVDRMELEMLRSKPEAGVKT KFLMELIRLCQARNEKVLVFSQYLEPLNLVIKQLESNFSWIQGEDILYMHGKLKIDERQILIKHFNNANSNAKVLLASTRACSEGINLVGASRVVLLDVL WNPSVERQAISRAYRLGQEKVVYIYHLITSGTMEEEKYFCQVEKERLSNLVFDCTNRSSNHQKGVFDIAEDKKDKILEEMVQHDKLKLMFKRIVYQPKDT NIVKSFDLDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Potri.014G050200 [exp]	0	1
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.010G031800 [exp]	7.07	0.8617
AT4G14480			Protein kinase superfamily pro...		Potri.016G049500 [exp]	10.72	0.8263
					Potri.010G030400 [exp]	12.72	0.8248
AT1G73240			unknown protein		Potri.003G213050 [exp]	16.24	0.8524
AT1G45207			Remorin family protein (.2)		Potri.002G125200 [exp]	17.32	0.8551
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Potri.014G190701 [exp]	18.84	0.8565
AT4G38760			Protein of unknown function (D...		Potri.004G168700 [exp]	20.61	0.8252
AT1G10417			unknown protein		Potri.008G190600 [exp]	20.66	0.8535
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Potri.008G182766 [exp]	20.97	0.8497
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Potri.008G203900 [exp]	22.04	0.8505

Compare expression of checked genes

Potri.014G050200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.