Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44740 285 / 8e-99 CYCP4;1 cyclin p4;1 (.1) AT5G61650 231 / 2e-77 CYCP4;2 CYCLIN P4;2 (.1) AT5G07450 226 / 1e-75 CYCP4;3 cyclin p4;3 (.1) AT3G63120 156 / 8e-48 CYCP1;1 cyclin p1;1 (.1) AT3G21870 149 / 2e-45 CYCP2;1 cyclin p2;1 (.1) AT3G05327 149 / 5e-45 Cyclin family protein (.1) AT2G45080 149 / 5e-45 CYCP3;1 cyclin p3;1 (.1) AT3G60550 145 / 1e-43 CYCP3;2 cyclin p3;2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G112140 [exp] 322 / 2e-113 AT2G44740 274 / 1e-94 cyclin p4;1 (.1) Potri.012G114600 [exp] 318 / 1e-111 AT2G44740 277 / 2e-95 cyclin p4;1 (.1) Potri.002G052800 [exp] 176 / 3e-55 AT3G63120 219 / 1e-71 cyclin p1;1 (.1) Potri.005G209800 [exp] 174 / 5e-55 AT3G63120 223 / 7e-74 cyclin p1;1 (.1) Potri.007G121500 [exp] 172 / 4e-54 AT3G21870 228 / 5e-76 cyclin p2;1 (.1) Potri.013G023000 [exp] 159 / 2e-49 AT3G05327 194 / 4e-63 Cyclin family protein (.1) Potri.005G033600 [exp] 156 / 4e-48 AT3G05327 184 / 5e-59 Cyclin family protein (.1) Potri.002G143400 [exp] 152 / 2e-46 AT2G45080 324 / 1e-113 cyclin p3;1 (.1) Potri.014G066400 [exp] 148 / 1e-44 AT3G60550 343 / 3e-121 cyclin p3;2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032505 [exp] 246 / 5e-83 AT2G44740 228 / 7e-76 cyclin p4;1 (.1) Lus10043003 [exp] 243 / 6e-82 AT2G44740 227 / 2e-75 cyclin p4;1 (.1) Lus10022038 [exp] 176 / 1e-55 AT3G63120 197 / 8e-64 cyclin p1;1 (.1) Lus10004475 [exp] 173 / 1e-54 AT3G05327 171 / 1e-53 Cyclin family protein (.1) Lus10029933 [exp] 172 / 2e-54 AT3G05327 172 / 3e-54 Cyclin family protein (.1) Lus10042582 [exp] 171 / 1e-53 AT3G63120 191 / 2e-61 cyclin p1;1 (.1) Lus10039697 [exp] 170 / 4e-53 AT3G21870 236 / 3e-79 cyclin p2;1 (.1) Lus10027148 [exp] 167 / 3e-51 AT3G21870 233 / 6e-77 cyclin p2;1 (.1) Lus10042873 [exp] 153 / 1e-46 AT3G60550 300 / 8e-104 cyclin p3;2 (.1) Lus10028174 [exp] 146 / 3e-44 AT2G45080 249 / 1e-84 cyclin p3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G050400.1 pacid=42763117 polypeptide=Potri.014G050400.1.p locus=Potri.014G050400 ID=Potri.014G050400.1.v4.1 annot-version=v4.1 ATGGCAGAGCTAGAGAGTACAAAGATGATGCCAAAATCAATCACATTTCTCTCTTCTTTGCTTCAAAGGGTTGCTGATTCTAATGATCTTAACCGCGAGT TTCAGCCACAGAAAATCTCGGTCTTCCATGGACTAACTAGGCCAACTATCTCTATTCAAAGTTACTTGGAGAGAATTTTCAAGTACGCAAATTGTAGCCC TTCTTGCTTTGTTGTTGCGTATGTGTATCTTGATAGGTTTGCTCAAAGACAACCTTCTTTGCCTATCAATTCTCTCAATGTTCATCGGTTGCTTATAACA AGTGTCTTGGTTTCTGCTAAGTTCATGGATGACATGTATTACAACAATGCTTACTATGCAAGAGTTGGAGGGATAAGCACGATTGAGATGAACTATCTAG AAGTGGATTTTCTATTTGGATTAGGCTTCAATTTAAATGTGACTCCAAACACCTTCCACACTTATTGCTCCTACCTTCAGAGAGAGATGATGCAACAACC TTCTCTGAATTTAGCTGAATCTTCATTGAACTTGGGGAGATCACTAAAAGTCCACTTGTGCTTCAATGAAGATGAGACATCCCATCAACAACAGCAACTT GCTGTTTAA
AA sequence Show only first row Show all	>Potri.014G050400.1 pacid=42763117 polypeptide=Potri.014G050400.1.p locus=Potri.014G050400 ID=Potri.014G050400.1.v4.1 annot-version=v4.1 MAELESTKMMPKSITFLSSLLQRVADSNDLNREFQPQKISVFHGLTRPTISIQSYLERIFKYANCSPSCFVVAYVYLDRFAQRQPSLPINSLNVHRLLIT SVLVSAKFMDDMYYNNAYYARVGGISTIEMNYLEVDFLFGLGFNLNVTPNTFHTYCSYLQREMMQQPSLNLAESSLNLGRSLKVHLCFNEDETSHQQQQL AV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Potri.014G050400 [exp]	0	1
AT4G05520		ATEHD2	EPS15 homology domain 2 (.1.2)		Potri.011G022300 [exp]	11.04	0.7893
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Potri.013G028800 [exp]	16.18	0.7828
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Potri.011G050800 [exp]	27.14	0.7494
AT5G65360			Histone superfamily protein (....		Potri.001G016900 [exp]	30.59	0.7535
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Potri.018G033000 [exp]	31.17	0.7222
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Potri.005G225700 [exp]	34.59	0.7373
AT1G47740			PPPDE putative thiol peptidase...		Potri.004G151200 [exp]	35.19	0.7361
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Potri.005G040700 [exp]	36.85	0.7454
AT4G23490			Protein of unknown function (D...		Potri.001G100700 [exp]	37.10	0.7078
AT5G65360			Histone superfamily protein (....		Potri.002G028800 [exp]	37.30	0.7550

Compare expression of checked genes

Potri.014G050400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.